99 lines
1.8 KiB
Nix
99 lines
1.8 KiB
Nix
{ lib
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, buildPythonPackage
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, cmake
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, fetchFromGitHub
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, joblib
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, jupyter
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, jupyter-client
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, matplotlib
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, nbconvert
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, ninja
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, numba
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, numpy
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, pandas
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, pybind11
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, pytestCheckHook
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, pythonOlder
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, scikit-build
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, scipy
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, setuptools
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}:
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buildPythonPackage rec {
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pname = "phik";
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version = "0.12.4";
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pyproject = true;
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disabled = pythonOlder "3.7";
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src = fetchFromGitHub {
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owner = "KaveIO";
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repo = "PhiK";
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rev = "refs/tags/v${version}";
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hash = "sha256-YsH7vVn6gzejunUjUY/RIcvWtaQ/W1gbciJWKi5LDTk=";
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};
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nativeBuildInputs = [
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cmake
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ninja
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scikit-build
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setuptools
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];
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propagatedBuildInputs = [
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joblib
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numpy
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scipy
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pandas
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matplotlib
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numba
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pybind11
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];
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nativeCheckInputs = [
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pytestCheckHook
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nbconvert
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jupyter
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jupyter-client
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];
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# Uses setuptools to drive build process
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dontUseCmakeConfigure = true;
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pythonImportsCheck = [
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"phik"
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];
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postInstall = ''
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rm -r $out/bin
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'';
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preCheck = ''
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# import from $out
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rm -r phik
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'';
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disabledTests = [
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# TypeError: 'numpy.float64' object cannot be interpreted as an integer
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# https://github.com/KaveIO/PhiK/issues/73
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"test_significance_matrix_hybrid"
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"test_significance_matrix_mc"
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];
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disabledTestPaths = [
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# Don't test integrations
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"tests/phik_python/integration/"
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];
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meta = with lib; {
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description = "Phi_K correlation analyzer library";
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longDescription = ''
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Phi_K is a new and practical correlation coefficient based on several refinements to
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Pearson’s hypothesis test of independence of two variables.
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'';
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homepage = "https://phik.readthedocs.io/";
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changelog = "https://github.com/KaveIO/PhiK/blob/${version}/CHANGES.rst";
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license = licenses.asl20;
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maintainers = with maintainers; [ melsigl ];
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};
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}
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