40 lines
1,008 B
Nix
40 lines
1,008 B
Nix
{ stdenv
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, fetchFromGitHub
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, pkgs
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, mpi ? false
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}:
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stdenv.mkDerivation rec {
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pname = "RAxML";
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version = "8.2.12";
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src = fetchFromGitHub {
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owner = "stamatak";
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repo = "standard-${pname}";
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rev = "v${version}";
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sha256 = "1jqjzhch0rips0vp04prvb8vmc20c5pdmsqn8knadcf91yy859fh";
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};
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buildInputs = if mpi then [ pkgs.openmpi ] else [];
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# TODO darwin, AVX and AVX2 makefile targets
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buildPhase = if mpi then ''
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make -f Makefile.MPI.gcc
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'' else ''
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make -f Makefile.SSE3.PTHREADS.gcc
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'';
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installPhase = if mpi then ''
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mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
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'' else ''
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mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin
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'';
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meta = with stdenv.lib; {
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description = "A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies";
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license = licenses.gpl3;
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homepage = "https://sco.h-its.org/exelixis/web/software/raxml/";
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maintainers = [ maintainers.unode ];
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platforms = [ "i686-linux" "x86_64-linux" ];
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};
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}
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