43 lines
1 KiB
Nix
43 lines
1 KiB
Nix
{lib, stdenv, fetchFromGitHub, cmake, zlib, python2}:
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stdenv.mkDerivation rec {
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pname = "strelka";
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version = "2.9.10";
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src = fetchFromGitHub {
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owner = "Illumina";
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repo = "strelka";
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rev = "v${version}";
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sha256 = "1nykbmim1124xh22nrhrsn8xgjb3s2y7akrdapn9sl1gdych4ppf";
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};
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nativeBuildInputs = [ cmake ];
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buildInputs = [ zlib python2 ];
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NIX_CFLAGS_COMPILE = [
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"-Wno-error=maybe-uninitialized"
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"-Wno-error=pessimizing-move"
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];
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preConfigure = ''
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sed -i 's|/usr/bin/env python|${python2}/bin/python|' src/python/lib/makeRunScript.py
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patchShebangs .
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'';
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postFixup = ''
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pushd $out/lib/python/pyflow
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sed -i 's|/bin/bash|${stdenv.shell}|' pyflowTaskWrapper.py
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rm pyflowTaskWrapper.pyc
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echo "import pyflowTaskWrapper" | python2
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popd
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'';
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meta = with lib; {
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description = "Germline and small variant caller";
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license = licenses.gpl3;
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homepage = "https://github.com/Illumina/strelka";
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maintainers = with maintainers; [ jbedo ];
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platforms = [ "x86_64-linux" ];
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};
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}
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