117 lines
4 KiB
Nix
117 lines
4 KiB
Nix
{ version, rev, sourceSha256 }:
|
|
|
|
{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake
|
|
, expat, fftw, gdcm, hdf5-cpp, libjpeg, libminc, libtiff, libpng
|
|
, libX11, libuuid, xz, vtk, zlib, Cocoa }:
|
|
|
|
let
|
|
itkGenericLabelInterpolatorSrc = fetchFromGitHub {
|
|
owner = "InsightSoftwareConsortium";
|
|
repo = "ITKGenericLabelInterpolator";
|
|
rev = "2f3768110ffe160c00c533a1450a49a16f4452d9";
|
|
hash = "sha256-Cm3jg14MMnbr/sP+gqR2Rh25xJjoRvpmY/jP/DKH978=";
|
|
};
|
|
|
|
itkAdaptiveDenoisingSrc = fetchFromGitHub {
|
|
owner = "ntustison";
|
|
repo = "ITKAdaptiveDenoising";
|
|
rev = "24825c8d246e941334f47968553f0ae388851f0c";
|
|
hash = "sha256-deJbza36c0Ohf9oKpO2T4po37pkyI+2wCSeGL4r17Go=";
|
|
};
|
|
|
|
itkSimpleITKFiltersSrc = fetchFromGitHub {
|
|
owner = "InsightSoftwareConsortium";
|
|
repo = "ITKSimpleITKFilters";
|
|
rev = "bb896868fc6480835495d0da4356d5db009592a6";
|
|
hash = "sha256-MfaIA0xxA/pzUBSwnAevr17iR23Bo5iQO2cSyknS3o4=";
|
|
};
|
|
in
|
|
|
|
stdenv.mkDerivation {
|
|
pname = "itk";
|
|
inherit version;
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "InsightSoftwareConsortium";
|
|
repo = "ITK";
|
|
inherit rev;
|
|
sha256 = sourceSha256;
|
|
};
|
|
|
|
patches = lib.optionals (lib.versionOlder version "5.4") [
|
|
(fetchpatch {
|
|
name = "fix-gcc13-build";
|
|
url = "https://github.com/InsightSoftwareConsortium/ITK/commit/9a719a0d2f5f489eeb9351b0ef913c3693147a4f.patch";
|
|
hash = "sha256-dDyqYOzo91afR8W7k2N64X6l7t6Ws1C9iuRkWHUe0fg=";
|
|
})
|
|
];
|
|
|
|
postPatch = ''
|
|
substituteInPlace CMake/ITKSetStandardCompilerFlags.cmake \
|
|
--replace "-march=corei7" "" \
|
|
--replace "-mtune=native" ""
|
|
ln -sr ${itkGenericLabelInterpolatorSrc} Modules/External/ITKGenericLabelInterpolator
|
|
ln -sr ${itkAdaptiveDenoisingSrc} Modules/External/ITKAdaptiveDenoising
|
|
ln -sr ${itkSimpleITKFiltersSrc} Modules/External/ITKSimpleITKFilters
|
|
'';
|
|
|
|
cmakeFlags = [
|
|
"-DBUILD_EXAMPLES=OFF"
|
|
"-DBUILD_SHARED_LIBS=ON"
|
|
"-DITK_FORBID_DOWNLOADS=ON"
|
|
"-DITK_USE_SYSTEM_LIBRARIES=ON" # finds common libraries e.g. hdf5, libpng, libtiff, zlib, but not GDCM, NIFTI, MINC, etc.
|
|
# note ITK_USE_SYSTEM_EIGEN, part of ITK_USE_SYSTEM_LIBRARIES,
|
|
# causes "...-itk-5.2.1/include/ITK-5.2/itkSymmetricEigenAnalysis.h:23:31: fatal error: Eigen/Eigenvalues: No such file or directory"
|
|
# when compiling c3d, but maybe an ITK 5.2/eigen version issue:
|
|
"-DITK_USE_SYSTEM_EIGEN=OFF"
|
|
"-DITK_USE_SYSTEM_GOOGLETEST=OFF" # ANTs build failure due to https://github.com/ANTsX/ANTs/issues/1489
|
|
"-DITK_USE_SYSTEM_GDCM=ON"
|
|
"-DITK_USE_SYSTEM_MINC=ON"
|
|
"-DLIBMINC_DIR=${libminc}/lib/cmake"
|
|
"-DModule_ITKMINC=ON"
|
|
"-DModule_ITKIOMINC=ON"
|
|
"-DModule_ITKIOTransformMINC=ON"
|
|
"-DModule_SimpleITKFilters=ON"
|
|
"-DModule_ITKVtkGlue=ON"
|
|
"-DModule_ITKReview=ON"
|
|
"-DModule_MGHIO=ON"
|
|
"-DModule_AdaptiveDenoising=ON"
|
|
"-DModule_GenericLabelInterpolator=ON"
|
|
];
|
|
|
|
nativeBuildInputs = [ cmake xz ];
|
|
buildInputs = [
|
|
libX11
|
|
libuuid
|
|
vtk
|
|
] ++ lib.optionals stdenv.isDarwin [ Cocoa ];
|
|
# Due to ITKVtkGlue=ON and the additional dependencies needed to configure VTK 9
|
|
# (specifically libGL and libX11 on Linux),
|
|
# it's now seemingly necessary for packages that configure ITK to
|
|
# also include configuration deps of VTK, even if VTK is not required or available.
|
|
# These deps were propagated from VTK 9 in https://github.com/NixOS/nixpkgs/pull/206935,
|
|
# so we simply propagate them again from ITK.
|
|
# This admittedly is a hack and seems like an issue with VTK 9's CMake configuration.
|
|
propagatedBuildInputs = [
|
|
# The dependencies we've un-vendored from ITK, such as GDCM, must be propagated,
|
|
# otherwise other software built against ITK fails to configure since ITK headers
|
|
# refer to these previously vendored libraries:
|
|
expat
|
|
fftw
|
|
gdcm
|
|
hdf5-cpp
|
|
libjpeg
|
|
libminc
|
|
libpng
|
|
libtiff
|
|
zlib
|
|
] ++ vtk.propagatedBuildInputs;
|
|
|
|
meta = {
|
|
description = "Insight Segmentation and Registration Toolkit";
|
|
mainProgram = "itkTestDriver";
|
|
homepage = "https://www.itk.org";
|
|
license = lib.licenses.asl20;
|
|
maintainers = [ ];
|
|
};
|
|
}
|