56 lines
1.2 KiB
Nix
56 lines
1.2 KiB
Nix
{
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lib,
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fetchFromGitHub,
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buildPythonPackage,
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pythonOlder,
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numpy,
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cython,
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zlib,
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python-lzo,
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nose,
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}:
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buildPythonPackage rec {
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pname = "bx-python";
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version = "0.11.0";
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format = "setuptools";
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disabled = pythonOlder "3.8";
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src = fetchFromGitHub {
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owner = "bxlab";
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repo = "bx-python";
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rev = "refs/tags/v${version}";
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hash = "sha256-evhxh/cCZFSK6EgMu7fC9/ZrPd2S1fZz89ItGYrHQck=";
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};
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nativeBuildInputs = [ cython ];
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buildInputs = [ zlib ];
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propagatedBuildInputs = [
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numpy
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python-lzo
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];
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nativeCheckInputs = [ nose ];
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postInstall = ''
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cp -r scripts/* $out/bin
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# This is a small hack; the test suite uses the scripts which need to
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# be patched. Linking the patched scripts in $out back to the
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# working directory allows the tests to run
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rm -rf scripts
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ln -s $out/bin scripts
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'';
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meta = with lib; {
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description = "Tools for manipulating biological data, particularly multiple sequence alignments";
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homepage = "https://github.com/bxlab/bx-python";
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changelog = "https://github.com/bxlab/bx-python/releases/tag/v${version}";
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license = licenses.mit;
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maintainers = with maintainers; [ jbedo ];
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platforms = [ "x86_64-linux" ];
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};
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}
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