96 lines
1.7 KiB
Nix
96 lines
1.7 KiB
Nix
{
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lib,
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fetchFromGitHub,
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buildPythonPackage,
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cmake,
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setuptools,
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boost,
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eigen,
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gmp,
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cgal, # see https://github.com/NixOS/nixpkgs/pull/94875 about cgal
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mpfr,
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tbb,
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numpy,
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cython,
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pybind11,
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matplotlib,
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scipy,
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pytest,
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enableTBB ? false,
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}:
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buildPythonPackage rec {
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pname = "gudhi";
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version = "3.9.0";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "GUDHI";
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repo = "gudhi-devel";
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rev = "tags/gudhi-release-${version}";
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fetchSubmodules = true;
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hash = "sha256-VL6RIPe8a2/cUHnHOql9e9EUMBB9QU311kMCaMZTbGI=";
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};
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nativeBuildInputs = [
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cmake
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numpy
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cython
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pybind11
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matplotlib
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setuptools
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];
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buildInputs = [
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boost
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eigen
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gmp
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cgal
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mpfr
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] ++ lib.optionals enableTBB [ tbb ];
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propagatedBuildInputs = [
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numpy
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scipy
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];
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nativeCheckInputs = [ pytest ];
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cmakeFlags = [
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(lib.cmakeBool "WITH_GUDHI_PYTHON" true)
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(lib.cmakeFeature "Python_ADDITIONAL_VERSIONS" "3")
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];
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prePatch = ''
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substituteInPlace src/python/CMakeLists.txt \
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--replace '"''${GUDHI_PYTHON_PATH_ENV}"' ""
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'';
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preBuild = ''
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cd src/python
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'';
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checkPhase = ''
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runHook preCheck
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rm -r gudhi
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ctest --output-on-failure
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runHook postCheck
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'';
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pythonImportsCheck = [
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"gudhi"
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"gudhi.hera"
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"gudhi.point_cloud"
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"gudhi.clustering"
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];
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meta = {
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description = "Library for Computational Topology and Topological Data Analysis (TDA)";
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homepage = "https://gudhi.inria.fr/python/latest/";
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downloadPage = "https://github.com/GUDHI/gudhi-devel";
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license = with lib.licenses; [
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mit
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gpl3
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];
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maintainers = with lib.maintainers; [ yl3dy ];
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};
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}
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