94 lines
1.7 KiB
Nix
94 lines
1.7 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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hatchling,
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hatch-vcs,
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numpy,
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scipy,
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pytestCheckHook,
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pytest-timeout,
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matplotlib,
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decorator,
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jinja2,
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pooch,
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tqdm,
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packaging,
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lazy-loader,
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h5io,
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pymatreader,
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pythonOlder,
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}:
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buildPythonPackage rec {
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pname = "mne-python";
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version = "1.7.1";
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pyproject = true;
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disabled = pythonOlder "3.9";
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src = fetchFromGitHub {
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owner = "mne-tools";
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repo = "mne-python";
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rev = "refs/tags/v${version}";
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hash = "sha256-piCFynpKh7gTWIGh2g0gJICLS+eg/0XAxaDkyu7v5vs=";
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};
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postPatch = ''
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substituteInPlace pyproject.toml \
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--replace-fail "--cov-report=" "" \
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--replace-fail "--cov-branch" ""
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'';
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nativeBuildInputs = [
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hatchling
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hatch-vcs
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];
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propagatedBuildInputs = [
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numpy
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scipy
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matplotlib
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tqdm
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pooch
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decorator
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packaging
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jinja2
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lazy-loader
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];
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passthru.optional-dependencies.hdf5 = [
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h5io
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pymatreader
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];
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nativeCheckInputs = [
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pytestCheckHook
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pytest-timeout
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] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies);
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preCheck = ''
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export HOME=$(mktemp -d)
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export MNE_SKIP_TESTING_DATASET_TESTS=true
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export MNE_SKIP_NETWORK_TESTS=1
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'';
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disabledTests = [
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# Fails due to changes in Numpy types
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"mne.stats._adjacency.combine_adjacency"
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];
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pythonImportsCheck = [ "mne" ];
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meta = with lib; {
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description = "Magnetoencephelography and electroencephalography in Python";
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mainProgram = "mne";
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homepage = "https://mne.tools";
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changelog = "https://mne.tools/stable/changes/v${version}.html";
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license = licenses.bsd3;
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maintainers = with maintainers; [
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bcdarwin
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mbalatsko
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];
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};
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}
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