74 lines
1.8 KiB
Nix
74 lines
1.8 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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pythonOlder,
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pytestCheckHook,
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numpy,
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pykwalify,
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pywavelets,
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setuptools,
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simpleitk,
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six,
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versioneer,
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}:
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buildPythonPackage rec {
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pname = "pyradiomics";
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version = "3.1.0";
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format = "pyproject";
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disabled = pythonOlder "3.6";
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src = fetchFromGitHub {
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owner = "AIM-Harvard";
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repo = "pyradiomics";
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rev = "refs/tags/v${version}";
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hash = "sha256-/qFNN63Bbq4DUZDPmwUGj1z5pY3ujsbqFJpVXbO+b8E=";
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name = "pyradiomics";
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};
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nativeBuildInputs = [
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setuptools
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versioneer
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];
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propagatedBuildInputs = [
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numpy
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pykwalify
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pywavelets
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simpleitk
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six
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];
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nativeCheckInputs = [ pytestCheckHook ];
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preCheck = ''
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rm -rf radiomics
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'';
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# tries to access network at collection time:
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disabledTestPaths = [ "tests/test_wavelet.py" ];
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# various urllib download errors and (probably related) missing feature errors:
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disabledTests = [
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"brain1_shape2D-original_shape2D"
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"brain2_shape2D-original_shape2D"
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"breast1_shape2D-original_shape2D"
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"lung1_shape2D-original_shape2D"
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"lung2_shape2D-original_shape2D"
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];
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# note the above elements of disabledTests are patterns, not exact tests,
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# so simply setting `disabledTests` does not suffice:
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pytestFlagsArray = [
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"-k '${toString (lib.intersperse "and" (lib.forEach disabledTests (t: "not ${t}")))}'"
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];
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pythonImportsCheck = [ "radiomics" ];
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meta = with lib; {
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homepage = "https://pyradiomics.readthedocs.io";
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description = "Extraction of Radiomics features from 2D and 3D images and binary masks";
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mainProgram = "pyradiomics";
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changelog = "https://github.com/AIM-Harvard/pyradiomics/releases/tag/v${version}";
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license = licenses.bsd3;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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