108 lines
1.9 KiB
Nix
108 lines
1.9 KiB
Nix
{
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stdenv,
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lib,
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buildPythonPackage,
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fetchPypi,
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isPyPy,
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R,
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libdeflate,
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rWrapper,
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rPackages,
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pcre,
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xz,
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bzip2,
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zlib,
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icu,
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ipython,
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jinja2,
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pytz,
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pandas,
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numpy,
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cffi,
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tzlocal,
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simplegeneric,
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pytestCheckHook,
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extraRPackages ? [ ],
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}:
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buildPythonPackage rec {
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version = "3.5.16";
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format = "setuptools";
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pname = "rpy2";
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disabled = isPyPy;
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src = fetchPypi {
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inherit version pname;
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hash = "sha256-g34vdFg2WKXEwzl2GnP5Q08z75ztPjDGTadWIWXCgBs=";
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};
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patches = [
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# R_LIBS_SITE is used by the nix r package to point to the installed R libraries.
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# This patch sets R_LIBS_SITE when rpy2 is imported.
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./rpy2-3.x-r-libs-site.patch
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];
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postPatch = ''
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substituteInPlace 'rpy2/rinterface_lib/embedded.py' --replace '@NIX_R_LIBS_SITE@' "$R_LIBS_SITE"
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substituteInPlace 'requirements.txt' --replace 'pytest' ""
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'';
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buildInputs =
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[
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pcre
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xz
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bzip2
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zlib
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icu
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libdeflate
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]
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++ (with rPackages; [
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# packages expected by the test framework
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ggplot2
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dplyr
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RSQLite
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broom
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DBI
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dbplyr
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hexbin
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lazyeval
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lme4
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tidyr
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])
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++ extraRPackages
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++ rWrapper.recommendedPackages;
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nativeBuildInputs = [
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R # needed at setup time to detect R_HOME (alternatively set R_HOME explicitly)
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];
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propagatedBuildInputs = [
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ipython
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jinja2
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pytz
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pandas
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numpy
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cffi
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tzlocal
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simplegeneric
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];
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doCheck = !stdenv.isDarwin;
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# https://github.com/rpy2/rpy2/issues/1111
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disabledTests = [
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"test_parse_incomplete_error"
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"test_parse_error"
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"test_parse_error_when_evaluting"
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];
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nativeCheckInputs = [ pytestCheckHook ];
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meta = {
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homepage = "https://rpy2.github.io/";
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description = "Python interface to R";
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license = lib.licenses.gpl2Plus;
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platforms = lib.platforms.unix;
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maintainers = with lib.maintainers; [ joelmo ];
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};
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}
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