65 lines
1.2 KiB
Nix
65 lines
1.2 KiB
Nix
{ stdenv
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, lib
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, buildPythonPackage
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, fetchFromGitHub
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, pytestCheckHook
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, pythonOlder
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, deprecated
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, humanize
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, matplotlib
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, nibabel
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, numpy
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, parameterized
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, scipy
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, simpleitk
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, torch
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, tqdm
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, typer
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}:
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buildPythonPackage rec {
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pname = "torchio";
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version = "0.19.1";
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format = "pyproject";
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disabled = pythonOlder "3.8";
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src = fetchFromGitHub {
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owner = "fepegar";
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repo = pname;
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rev = "refs/tags/v${version}";
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hash = "sha256-SNX558kSRCS9Eks00Kj2kFmo7hCUgV6saYLsnx/Kus0=";
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};
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propagatedBuildInputs = [
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deprecated
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humanize
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nibabel
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numpy
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scipy
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simpleitk
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torch
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tqdm
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typer
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] ++ typer.passthru.optional-dependencies.all;
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nativeCheckInputs = [ pytestCheckHook matplotlib parameterized ];
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disabledTests = [
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# tries to download models:
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"test_load_all"
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] ++ lib.optionals stdenv.isAarch64 [
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# RuntimeError: DataLoader worker (pid(s) <...>) exited unexpectedly
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"test_queue_multiprocessing"
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];
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pythonImportsCheck = [
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"torchio"
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"torchio.data"
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];
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meta = with lib; {
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description = "Medical imaging toolkit for deep learning";
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homepage = "https://torchio.readthedocs.io";
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license = licenses.asl20;
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maintainers = [ maintainers.bcdarwin ];
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};
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}
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