78 lines
1.6 KiB
Nix
78 lines
1.6 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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fetchpatch,
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pythonOlder,
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ninja,
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ignite,
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numpy,
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pybind11,
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torch,
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which,
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}:
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buildPythonPackage rec {
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pname = "monai";
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version = "1.3.2";
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pyproject = true;
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disabled = pythonOlder "3.8";
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src = fetchFromGitHub {
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owner = "Project-MONAI";
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repo = "MONAI";
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rev = "refs/tags/${version}";
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hash = "sha256-wm4n3FuIXbE99RRLsGnZDeHtR/Tmj6C0s29pvflZg+o=";
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};
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patches = [
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(fetchpatch {
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name = "remove-distutils";
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url = "https://github.com/Project-MONAI/MONAI/commit/87862f0d5730d42d282e779fc1450f18b4869863.patch";
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hash = "sha256-wApYfugDPWcuxwmd91peNqc0+l+SoMlT8hhx99oI2Co=";
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})
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];
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preBuild = ''
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export MAX_JOBS=$NIX_BUILD_CORES;
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'';
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nativeBuildInputs = [
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ninja
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which
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];
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buildInputs = [ pybind11 ];
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propagatedBuildInputs = [
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numpy
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torch
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ignite
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];
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BUILD_MONAI = 1;
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doCheck = false; # takes too long; tries to download data
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pythonImportsCheck = [
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"monai"
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"monai.apps"
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"monai.data"
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"monai.engines"
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"monai.handlers"
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"monai.inferers"
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"monai.losses"
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"monai.metrics"
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"monai.optimizers"
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"monai.networks"
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"monai.transforms"
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"monai.utils"
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"monai.visualize"
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];
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meta = with lib; {
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description = "Pytorch framework (based on Ignite) for deep learning in medical imaging";
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homepage = "https://github.com/Project-MONAI/MONAI";
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changelog = "https://github.com/Project-MONAI/MONAI/releases/tag/${version}";
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license = licenses.asl20;
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maintainers = [ maintainers.bcdarwin ];
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};
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}
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