39 lines
1.1 KiB
Nix
39 lines
1.1 KiB
Nix
{lib, stdenv, fetchurl, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, xz, pkg-config}:
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stdenv.mkDerivation rec {
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pname = "octopus";
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version = "0.7.4";
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src = fetchFromGitHub {
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owner = "luntergroup";
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repo = "octopus";
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rev = "v${version}";
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sha256 = "sha256-FAogksVxUlzMlC0BqRu22Vchj6VX+8yNlHRLyb3g1sE=";
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};
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nativeBuildInputs = [ cmake pkg-config ];
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buildInputs = [ boost gmp htslib zlib xz ];
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patches = [ (fetchurl {
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url = "https://github.com/luntergroup/octopus/commit/17a597d192bcd5192689bf38c5836a98b824867a.patch";
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sha256 = "sha256-VaUr63v7mzhh4VBghH7a7qrqOYwl6vucmmKzTi9yAjY=";
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}) ];
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env.NIX_CFLAGS_COMPILE = toString [
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# Needed with GCC 12
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"-Wno-error=deprecated-declarations"
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];
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postInstall = ''
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mkdir $out/bin
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mv $out/octopus $out/bin
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'';
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meta = with lib; {
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description = "Bayesian haplotype-based mutation calling";
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license = licenses.mit;
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homepage = "https://github.com/luntergroup/octopus";
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.x86_64;
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};
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}
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