68 lines
1.4 KiB
Nix
68 lines
1.4 KiB
Nix
{ buildPythonPackage
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, lib
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, fetchPypi
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, fetchpatch
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, formulaic
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, click
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, num2words
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, numpy
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, scipy
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, pandas
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, nibabel
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, patsy
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, bids-validator
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, sqlalchemy
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, pytestCheckHook
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, versioneer
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, pythonRelaxDepsHook
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}:
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buildPythonPackage rec {
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version = "0.15.6";
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pname = "pybids";
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-OjWW08tyVDHkF0X3Pa+10HYD/7Gysp5DkEt9LaVxsdM=";
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};
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patches = [
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# remove after next release
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(fetchpatch {
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name = "fix-pybids-sqlalchemy-dep";
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url = "https://github.com/bids-standard/pybids/commit/5f008dfc282394ef94a68d47dba37ceead9eac9a.patch";
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hash = "sha256-gx6w35XqDBZ8cTGHeY/mz2xNQqza9E5z8bRJR7mbPcg=";
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excludes = [ "pyproject.toml" ]; # not in PyPI dist
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})
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];
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nativeBuildInputs = [ pythonRelaxDepsHook ];
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pythonRelaxDeps = [ "sqlalchemy" ];
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propagatedBuildInputs = [
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click
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formulaic
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num2words
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numpy
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scipy
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pandas
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nibabel
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patsy
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bids-validator
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sqlalchemy
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versioneer
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];
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nativeCheckInputs = [ pytestCheckHook ];
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pythonImportsCheck = [ "bids" ];
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# looks for missing data:
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disabledTests = [ "test_config_filename" ];
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meta = with lib; {
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description = "Python tools for querying and manipulating BIDS datasets";
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homepage = "https://github.com/bids-standard/pybids";
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license = licenses.mit;
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maintainers = with maintainers; [ jonringer ];
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};
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}
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