32 lines
867 B
Nix
32 lines
867 B
Nix
{ lib, stdenv, fetchurl, zlib, bzip2, cmake, python3 }:
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stdenv.mkDerivation rec {
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pname = "SPAdes";
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version = "3.15.5";
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src = fetchurl {
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url = "http://cab.spbu.ru/files/release${version}/${pname}-${version}.tar.gz";
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sha256 = "sha256-FVw2QNVx8uexmgUDHR/Q0ZvYLfeF04hw+5O9JBsSu/o=";
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};
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nativeBuildInputs = [ cmake ];
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buildInputs = [ zlib bzip2 python3 ];
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doCheck = true;
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sourceRoot = "${pname}-${version}/src";
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env.CXXFLAGS = toString [
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# GCC 13: error: 'uint32_t' does not name a type
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"-include cstdint"
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];
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meta = with lib; {
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description = "St. Petersburg genome assembler: assembly toolkit containing various assembly pipelines";
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license = licenses.gpl2Only;
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homepage = "http://cab.spbu.ru/software/spades/";
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platforms = [ "x86_64-linux" "x86_64-darwin" ];
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maintainers = [ maintainers.bzizou ];
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};
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}
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