148 lines
4 KiB
Nix
148 lines
4 KiB
Nix
{ stdenv
|
|
, buildPythonPackage
|
|
, fetchPypi
|
|
, python
|
|
, isPy38
|
|
, beautifulsoup4
|
|
, bottleneck
|
|
, cython
|
|
, dateutil
|
|
, html5lib
|
|
, lxml
|
|
, numexpr
|
|
, openpyxl
|
|
, pytz
|
|
, sqlalchemy
|
|
, scipy
|
|
, tables
|
|
, xlrd
|
|
, xlwt
|
|
# Test Inputs
|
|
, glibcLocales
|
|
, hypothesis
|
|
, moto
|
|
, pytestCheckHook
|
|
# Darwin inputs
|
|
, runtimeShell
|
|
, libcxx ? null
|
|
}:
|
|
|
|
let
|
|
inherit (stdenv.lib) optional optionals optionalString;
|
|
inherit (stdenv) isDarwin;
|
|
|
|
in buildPythonPackage rec {
|
|
pname = "pandas";
|
|
version = "1.1.4";
|
|
|
|
src = fetchPypi {
|
|
inherit pname version;
|
|
sha256 = "a979d0404b135c63954dea79e6246c45dd45371a88631cdbb4877d844e6de3b6";
|
|
};
|
|
|
|
nativeBuildInputs = [ cython ];
|
|
buildInputs = optional isDarwin libcxx;
|
|
propagatedBuildInputs = [
|
|
beautifulsoup4
|
|
bottleneck
|
|
dateutil
|
|
html5lib
|
|
numexpr
|
|
lxml
|
|
openpyxl
|
|
pytz
|
|
scipy
|
|
sqlalchemy
|
|
tables
|
|
xlrd
|
|
xlwt
|
|
];
|
|
|
|
checkInputs = [ pytestCheckHook glibcLocales moto hypothesis ];
|
|
|
|
# doesn't work with -Werror,-Wunused-command-line-argument
|
|
# https://github.com/NixOS/nixpkgs/issues/39687
|
|
hardeningDisable = optional stdenv.cc.isClang "strictoverflow";
|
|
|
|
# For OSX, we need to add a dependency on libcxx, which provides
|
|
# `complex.h` and other libraries that pandas depends on to build.
|
|
postPatch = optionalString isDarwin ''
|
|
cpp_sdk="${libcxx}/include/c++/v1";
|
|
echo "Adding $cpp_sdk to the setup.py common_include variable"
|
|
substituteInPlace setup.py \
|
|
--replace "['pandas/src/klib', 'pandas/src']" \
|
|
"['pandas/src/klib', 'pandas/src', '$cpp_sdk']"
|
|
'';
|
|
|
|
# Parallel Cythonization is broken in Python 3.8 on Darwin. Fixed in the next
|
|
# release. https://github.com/pandas-dev/pandas/pull/30862
|
|
setupPyBuildFlags = optionals (!(isPy38 && isDarwin)) [
|
|
# As suggested by
|
|
# https://pandas.pydata.org/pandas-docs/stable/development/contributing.html#creating-a-python-environment
|
|
"--parallel=$NIX_BUILD_CORES"
|
|
];
|
|
|
|
doCheck = !stdenv.isAarch64; # upstream doesn't test this architecture
|
|
|
|
pytestFlagsArray = [
|
|
"$out/${python.sitePackages}/pandas"
|
|
"--skip-slow"
|
|
"--skip-network"
|
|
];
|
|
disabledTests = [
|
|
# since dateutil 0.6.0 the following fails: test_fallback_plural, test_ambiguous_flags, test_ambiguous_compat
|
|
# was supposed to be solved by https://github.com/dateutil/dateutil/issues/321, but is not the case
|
|
"test_fallback_plural"
|
|
"test_ambiguous_flags"
|
|
"test_ambiguous_compat"
|
|
# Locale-related
|
|
"test_names"
|
|
"test_dt_accessor_datetime_name_accessors"
|
|
"test_datetime_name_accessors"
|
|
# Can't import from test folder
|
|
"test_oo_optimizable"
|
|
# Disable IO related tests because IO data is no longer distributed
|
|
"io"
|
|
# KeyError Timestamp
|
|
"test_to_excel"
|
|
# ordering logic has changed
|
|
"numpy_ufuncs_other"
|
|
"order_without_freq"
|
|
# tries to import from pandas.tests post install
|
|
"util_in_top_level"
|
|
# Fails with 1.0.5
|
|
"test_constructor_list_frames"
|
|
"test_constructor_with_embedded_frames"
|
|
# tries to import compiled C extension locally
|
|
"test_missing_required_dependency"
|
|
] ++ optionals isDarwin [
|
|
"test_locale"
|
|
"test_clipboard"
|
|
];
|
|
|
|
preCheck = ''
|
|
export LC_ALL="en_US.UTF-8"
|
|
PYTHONPATH=$out/${python.sitePackages}:$PYTHONPATH
|
|
''
|
|
# TODO: Get locale and clipboard support working on darwin.
|
|
# Until then we disable the tests.
|
|
+ optionalString isDarwin ''
|
|
# Fake the impure dependencies pbpaste and pbcopy
|
|
echo "#!${runtimeShell}" > pbcopy
|
|
echo "#!${runtimeShell}" > pbpaste
|
|
chmod a+x pbcopy pbpaste
|
|
export PATH=$(pwd):$PATH
|
|
'';
|
|
|
|
meta = with stdenv.lib; {
|
|
# https://github.com/pandas-dev/pandas/issues/14866
|
|
# pandas devs are no longer testing i686 so safer to assume it's broken
|
|
broken = stdenv.isi686;
|
|
homepage = "https://pandas.pydata.org/";
|
|
changelog = "https://pandas.pydata.org/docs/whatsnew/index.html";
|
|
description = "Python Data Analysis Library";
|
|
license = licenses.bsd3;
|
|
maintainers = with maintainers; [ raskin fridh knedlsepp ];
|
|
platforms = platforms.unix;
|
|
};
|
|
}
|