70 lines
1.3 KiB
Nix
70 lines
1.3 KiB
Nix
{ lib
|
|
, buildPythonPackage
|
|
, fetchPypi
|
|
, cython
|
|
, ecos
|
|
, joblib
|
|
, numexpr
|
|
, numpy
|
|
, osqp
|
|
, pandas
|
|
, scikit-learn
|
|
, scipy
|
|
, pytestCheckHook
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "scikit-survival";
|
|
version = "0.15.0.post0";
|
|
|
|
src = fetchPypi {
|
|
inherit pname version;
|
|
sha256 = "572c3ac6818a9d0944fc4b8176eb948051654de857e28419ecc5060bcc6fbf37";
|
|
};
|
|
|
|
nativeBuildInputs = [
|
|
cython
|
|
];
|
|
|
|
propagatedBuildInputs = [
|
|
ecos
|
|
joblib
|
|
numexpr
|
|
numpy
|
|
osqp
|
|
pandas
|
|
scikit-learn
|
|
scipy
|
|
];
|
|
|
|
pythonImportsCheck = [ "sksurv" ];
|
|
|
|
checkInputs = [ pytestCheckHook ];
|
|
|
|
# Hack needed to make pytest + cython work
|
|
# https://github.com/NixOS/nixpkgs/pull/82410#issuecomment-827186298
|
|
preCheck = ''
|
|
export HOME=$(mktemp -d)
|
|
cp -r $TMP/$sourceRoot/tests $HOME
|
|
pushd $HOME
|
|
'';
|
|
postCheck = "popd";
|
|
|
|
# very long tests, unnecessary for a leaf package
|
|
disabledTests = [
|
|
"test_coxph"
|
|
"test_datasets"
|
|
"test_ensemble_selection"
|
|
"test_minlip"
|
|
"test_pandas_inputs"
|
|
"test_survival_svm"
|
|
"test_tree"
|
|
];
|
|
|
|
meta = with lib; {
|
|
description = "Survival analysis built on top of scikit-learn";
|
|
homepage = "https://github.com/sebp/scikit-survival";
|
|
license = licenses.gpl3Only;
|
|
maintainers = with maintainers; [ GuillaumeDesforges ];
|
|
};
|
|
}
|