75 lines
1.6 KiB
Nix
75 lines
1.6 KiB
Nix
{ lib
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, fetchPypi
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, buildPythonPackage
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, pythonOlder
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, Theano
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, pandas
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, patsy
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, joblib
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, tqdm
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, six
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, h5py
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, arviz
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, packaging
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, pytest
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, nose
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, parameterized
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, fastprogress
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, typing-extensions
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}:
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buildPythonPackage rec {
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pname = "pymc3";
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version = "3.11.4";
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disabled = pythonOlder "3.5";
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src = fetchPypi {
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inherit pname version;
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sha256 = "3b88d1e6c85f7fb8a9b99d6f136ac860672170370ec4146338fdd160c3b3fd3f";
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};
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# No need for coverage stats in Nix builds
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postPatch = ''
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substituteInPlace setup.py --replace ", 'pytest-cov'" ""
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'';
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propagatedBuildInputs = [
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Theano
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pandas
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patsy
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joblib
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tqdm
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six
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h5py
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arviz
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packaging
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fastprogress
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typing-extensions
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];
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checkInputs = [
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pytest
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nose
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parameterized
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];
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# The test suite is computationally intensive and test failures are not
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# indicative for package usability hence tests are disabled by default.
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doCheck = false;
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pythonImportsCheck = [ "pymc3" ];
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# For some reason tests are run as a part of the *install* phase if enabled.
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# Theano writes compiled code to ~/.theano hence we set $HOME.
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preInstall = "export HOME=$(mktemp -d)";
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postInstall = "rm -rf $HOME";
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meta = {
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description = "Bayesian estimation, particularly using Markov chain Monte Carlo (MCMC)";
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homepage = "https://github.com/pymc-devs/pymc3";
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license = lib.licenses.asl20;
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maintainers = with lib.maintainers; [ ilya-kolpakov ];
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# several dependencies are not declared and in the end it requires theano-pymc3
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# instead of Theano. The former is currently not packaged.
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broken = true;
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};
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}
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