88 lines
1.8 KiB
Nix
88 lines
1.8 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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pythonAtLeast,
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pythonOlder,
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# build inputs
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networkx,
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numpy,
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scipy,
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scikit-learn,
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pandas,
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pyparsing,
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torch,
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statsmodels,
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tqdm,
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joblib,
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opt-einsum,
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# check inputs
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pytestCheckHook,
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pytest-cov,
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coverage,
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mock,
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black,
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}:
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let
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pname = "pgmpy";
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version = "0.1.25";
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in
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# optional-dependencies = {
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# all = [ daft ];
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# };
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buildPythonPackage {
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inherit pname version;
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format = "setuptools";
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disabled = pythonOlder "3.7";
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src = fetchFromGitHub {
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owner = "pgmpy";
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repo = pname;
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rev = "refs/tags/v${version}";
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hash = "sha256-d2TNcJQ82XxTWdetLgtKXRpFulAEEzrr+cyRewoA6YI=";
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};
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# TODO: Remove this patch after updating to pgmpy 0.1.26.
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# The PR https://github.com/pgmpy/pgmpy/pull/1745 will have been merged.
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# It contains the fix below, among other things, which is why we do not use fetchpatch.
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postPatch = lib.optionalString (pythonAtLeast "3.12") ''
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substituteInPlace pgmpy/tests/test_estimators/test_MarginalEstimator.py \
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--replace-fail 'self.assert_' 'self.assertTrue'
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'';
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propagatedBuildInputs = [
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networkx
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numpy
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scipy
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scikit-learn
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pandas
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pyparsing
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torch
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statsmodels
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tqdm
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joblib
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opt-einsum
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];
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disabledTests = [
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"test_to_daft" # requires optional dependency daft
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];
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nativeCheckInputs = [
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pytestCheckHook
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# xdoctest
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pytest-cov
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coverage
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mock
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black
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];
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meta = with lib; {
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description = "Python Library for learning (Structure and Parameter), inference (Probabilistic and Causal), and simulations in Bayesian Networks";
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homepage = "https://github.com/pgmpy/pgmpy";
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changelog = "https://github.com/pgmpy/pgmpy/releases/tag/v${version}";
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license = licenses.mit;
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maintainers = with maintainers; [ happysalada ];
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};
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}
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