83 lines
2 KiB
Nix
83 lines
2 KiB
Nix
{
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lib,
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python,
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buildPythonPackage,
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fetchFromGitHub,
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cython,
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pybind11,
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tiledb,
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numpy,
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wheel,
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isPy3k,
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setuptools-scm,
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psutil,
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pandas,
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}:
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buildPythonPackage rec {
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pname = "tiledb";
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version = "0.26.2";
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format = "setuptools";
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src = fetchFromGitHub {
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owner = "TileDB-Inc";
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repo = "TileDB-Py";
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rev = "refs/tags/${version}";
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hash = "sha256-8c1l4zoD44SjaOUXlFUSho/y7oMNOEVM9ZlnRs1irV8=";
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};
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nativeBuildInputs = [
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cython
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pybind11
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setuptools-scm
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];
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buildInputs = [ tiledb ];
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propagatedBuildInputs = [
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numpy
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wheel # No idea why but it is listed
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];
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nativeCheckInputs = [
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psutil
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# optional
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pandas
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];
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TILEDB_PATH = tiledb;
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disabled = !isPy3k; # Not bothering with python2 anymore
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postPatch = ''
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# Hardcode path to shared object
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substituteInPlace tiledb/__init__.py --replace \
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'os.path.join(lib_dir, lib_name)' 'os.path.join("${tiledb}/lib", lib_name)'
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# Disable failing test
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substituteInPlace tiledb/tests/test_examples.py --replace \
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"test_docs" "dont_test_docs"
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# these tests don't always fail
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substituteInPlace tiledb/tests/test_libtiledb.py --replace \
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"test_varlen_write_int_subarray" "dont_test_varlen_write_int_subarray" \
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--replace "test_memory_cleanup" "dont_test_memory_cleanup" \
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--replace "test_ctx_thread_cleanup" "dont_test_ctx_thread_cleanup"
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substituteInPlace tiledb/tests/test_metadata.py --replace \
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"test_metadata_consecutive" "dont_test_metadata_consecutive"
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'';
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checkPhase = ''
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pushd "$TMPDIR"
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${python.interpreter} -m unittest tiledb.tests.all.suite_test
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popd
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'';
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pythonImportsCheck = [ "tiledb" ];
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meta = with lib; {
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description = "Python interface to the TileDB storage manager";
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homepage = "https://github.com/TileDB-Inc/TileDB-Py";
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license = licenses.mit;
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# tiledb/core.cc:556:30: error: ‘struct std::array<long unsigned int, 2>’ has no member named ‘second’
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broken = true;
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};
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}
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