depot/third_party/nixpkgs/pkgs/applications/science/biology/hh-suite/default.nix

47 lines
1.4 KiB
Nix

{ lib
, stdenv
, fetchFromGitHub
, fetchpatch
, cmake
, xxd
, enableMpi ? false
, mpi
, openmp
}:
stdenv.mkDerivation rec {
pname = "hh-suite";
version = "3.3.0";
src = fetchFromGitHub {
owner = "soedinglab";
repo = "hh-suite";
rev = "v${version}";
hash = "sha256-kjNqJddioCZoh/cZL3YNplweIGopWIGzCYQOnKDqZmw=";
};
patches = [
# Should be removable as soon as this upstream PR is merged: https://github.com/soedinglab/hh-suite/pull/357
(fetchpatch {
name = "fix-gcc13-build-issues.patch";
url = "https://github.com/soedinglab/hh-suite/commit/cec47cba5dcd580e668b1ee507c9282fbdc8e7d7.patch";
hash = "sha256-Msdmj9l8voPYXK0SSwUA6mEbFLBhTjjE/Kjp0VL4Kf4=";
})
];
nativeBuildInputs = [ cmake xxd ];
cmakeFlags = lib.optional stdenv.hostPlatform.isx86 "-DHAVE_SSE2=1"
++ lib.optional stdenv.hostPlatform.isAarch "-DHAVE_ARM8=1"
++ lib.optional stdenv.hostPlatform.avx2Support "-DHAVE_AVX2=1"
++ lib.optional stdenv.hostPlatform.sse4_1Support "-DHAVE_SSE4_1=1";
buildInputs = lib.optional stdenv.cc.isClang openmp
++ lib.optional enableMpi mpi;
meta = with lib; {
description = "Remote protein homology detection suite";
homepage = "https://github.com/soedinglab/hh-suite";
license = licenses.gpl3Plus;
maintainers = with maintainers; [ natsukium ];
platforms = platforms.unix;
};
}