56 lines
1.5 KiB
Nix
56 lines
1.5 KiB
Nix
{ lib
|
|
, stdenv
|
|
, fetchurl
|
|
, makeWrapper
|
|
, jre
|
|
, wget
|
|
, which
|
|
, gnused
|
|
, gawk
|
|
, coreutils
|
|
}:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "nextflow";
|
|
version = "21.10.6";
|
|
|
|
src = fetchurl {
|
|
url = "https://github.com/nextflow-io/nextflow/releases/download/v${version}/nextflow-${version}-all";
|
|
sha256 = "0l9hi51vrhvfx3px2pxw7lp4h21n8ks50x4icfk3hbgl2hwf7fvx";
|
|
};
|
|
|
|
nativeBuildInputs = [ makeWrapper ];
|
|
buildInputs = [ jre wget which gnused gawk coreutils ];
|
|
|
|
dontUnpack = true;
|
|
|
|
installPhase = ''
|
|
runHook preInstall
|
|
|
|
mkdir -p $out/bin
|
|
install -Dm755 $src $out/bin/nextflow
|
|
|
|
runHook postInstall
|
|
'';
|
|
|
|
postFixup = ''
|
|
wrapProgram $out/bin/nextflow --prefix PATH : ${lib.makeBinPath buildInputs}
|
|
'';
|
|
|
|
meta = with lib; {
|
|
description = "A DSL for data-driven computational pipelines";
|
|
longDescription = ''
|
|
Nextflow is a bioinformatics workflow manager that enables the development of portable and reproducible workflows.
|
|
|
|
It supports deploying workflows on a variety of execution platforms including local, HPC schedulers, AWS Batch, Google Cloud Life Sciences, and Kubernetes.
|
|
|
|
Additionally, it provides support for manage your workflow dependencies through built-in support for Conda, Docker, Singularity, and Modules.
|
|
'';
|
|
homepage = "https://www.nextflow.io/";
|
|
changelog = "https://github.com/nextflow-io/nextflow/releases";
|
|
license = licenses.asl20;
|
|
maintainers = [ maintainers.Etjean ];
|
|
mainProgram = "nextflow";
|
|
platforms = platforms.unix;
|
|
};
|
|
}
|