150 lines
6 KiB
Nix
150 lines
6 KiB
Nix
{ lib, stdenv, fetchurl, bzip2, gfortran, libX11, libXmu, libXt, libjpeg, libpng
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, libtiff, ncurses, pango, pcre2, perl, readline, tcl, texlive, texliveSmall, tk, xz, zlib
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, less, texinfo, graphviz, icu, pkg-config, bison, imake, which, jdk, blas, lapack
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, curl, Cocoa, Foundation, libobjc, libcxx, tzdata
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, withRecommendedPackages ? true
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, enableStrictBarrier ? false
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, enableMemoryProfiling ? false
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# R as of writing does not support outputting both .so and .a files; it outputs:
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# --enable-R-static-lib conflicts with --enable-R-shlib and will be ignored
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, static ? false
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, testers
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}:
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assert (!blas.isILP64) && (!lapack.isILP64);
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stdenv.mkDerivation (finalAttrs: {
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pname = "R";
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version = "4.3.2";
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src = let
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inherit (finalAttrs) pname version;
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in fetchurl {
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url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz";
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sha256 = "sha256-s/V2CsLu6AJqPw7vyyW0dyPZeAOO7o6ER2IJTIYMRSo=";
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};
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outputs = [ "out" "tex" ];
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dontUseImakeConfigure = true;
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nativeBuildInputs = [ pkg-config ];
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buildInputs = [
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bzip2 gfortran libX11 libXmu libXt libXt libjpeg libpng libtiff ncurses
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pango pcre2 perl readline (texliveSmall.withPackages (ps: with ps; [ inconsolata helvetic ps.texinfo fancyvrb cm-super rsfs ])) xz zlib less texinfo graphviz icu
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bison imake which blas lapack curl tcl tk jdk tzdata
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] ++ lib.optionals stdenv.isDarwin [ Cocoa Foundation libobjc libcxx ];
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patches = [
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./no-usr-local-search-paths.patch
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];
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# Test of the examples for package 'tcltk' fails in Darwin sandbox. See:
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# https://github.com/NixOS/nixpkgs/issues/146131
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postPatch = lib.optionalString stdenv.isDarwin ''
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substituteInPlace configure \
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--replace "-install_name libRblas.dylib" "-install_name $out/lib/R/lib/libRblas.dylib" \
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--replace "-install_name libRlapack.dylib" "-install_name $out/lib/R/lib/libRlapack.dylib" \
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--replace "-install_name libR.dylib" "-install_name $out/lib/R/lib/libR.dylib"
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substituteInPlace tests/Examples/Makefile.in \
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--replace "test-Examples: test-Examples-Base" "test-Examples:" # do not test the examples
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'';
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dontDisableStatic = static;
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preConfigure = ''
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configureFlagsArray=(
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--disable-lto
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--with${lib.optionalString (!withRecommendedPackages) "out"}-recommended-packages
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--with-blas="-L${blas}/lib -lblas"
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--with-lapack="-L${lapack}/lib -llapack"
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--with-readline
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--with-tcltk --with-tcl-config="${tcl}/lib/tclConfig.sh" --with-tk-config="${tk}/lib/tkConfig.sh"
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--with-cairo
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--with-libpng
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--with-jpeglib
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--with-libtiff
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--with-ICU
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${lib.optionalString enableStrictBarrier "--enable-strict-barrier"}
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${lib.optionalString enableMemoryProfiling "--enable-memory-profiling"}
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${if static then "--enable-R-static-lib" else "--enable-R-shlib"}
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AR=$(type -p ar)
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AWK=$(type -p gawk)
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CC=$(type -p cc)
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CXX=$(type -p c++)
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FC="${gfortran}/bin/gfortran" F77="${gfortran}/bin/gfortran"
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JAVA_HOME="${jdk}"
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RANLIB=$(type -p ranlib)
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r_cv_have_curl728=yes
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R_SHELL="${stdenv.shell}"
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'' + lib.optionalString stdenv.isDarwin ''
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--disable-R-framework
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--without-x
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OBJC="clang"
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CPPFLAGS="-isystem ${lib.getDev libcxx}/include/c++/v1"
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LDFLAGS="-L${lib.getLib libcxx}/lib"
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'' + ''
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)
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echo >>etc/Renviron.in "TCLLIBPATH=${tk}/lib"
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echo >>etc/Renviron.in "TZDIR=${tzdata}/share/zoneinfo"
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'';
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installTargets = [ "install" "install-info" "install-pdf" ];
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# move tex files to $tex for use with texlive.combine
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# add link in $out since ${R_SHARE_DIR}/texmf is hardcoded in several places
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postInstall = ''
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mv -T "$out/lib/R/share/texmf" "$tex"
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ln -s "$tex" "$out/lib/R/share/texmf"
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'';
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# The store path to "which" is baked into src/library/base/R/unix/system.unix.R,
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# but Nix cannot detect it as a run-time dependency because the installed file
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# is compiled and compressed, which hides the store path.
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postFixup = "echo ${which} > $out/nix-support/undetected-runtime-dependencies";
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doCheck = true;
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preCheck = "export HOME=$TMPDIR; export TZ=CET; bin/Rscript -e 'sessionInfo()'";
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enableParallelBuilding = true;
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setupHook = ./setup-hook.sh;
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passthru.tests.pkg-config = testers.testMetaPkgConfig finalAttrs.finalPackage;
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# make tex output available to texlive.combine
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passthru.pkgs = [ finalAttrs.finalPackage.tex ];
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passthru.tlType = "run";
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# dependencies (based on \RequirePackage in jss.cls, Rd.sty, Sweave.sty)
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passthru.tlDeps = with texlive; [ amsfonts amsmath fancyvrb graphics hyperref iftex jknapltx latex lm tools upquote url ];
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meta = with lib; {
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homepage = "http://www.r-project.org/";
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description = "Free software environment for statistical computing and graphics";
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license = licenses.gpl2Plus;
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longDescription = ''
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GNU R is a language and environment for statistical computing and
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graphics that provides a wide variety of statistical (linear and
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nonlinear modelling, classical statistical tests, time-series
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analysis, classification, clustering, ...) and graphical
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techniques, and is highly extensible. One of R's strengths is the
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ease with which well-designed publication-quality plots can be
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produced, including mathematical symbols and formulae where
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needed. R is an integrated suite of software facilities for data
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manipulation, calculation and graphical display. It includes an
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effective data handling and storage facility, a suite of operators
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for calculations on arrays, in particular matrices, a large,
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coherent, integrated collection of intermediate tools for data
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analysis, graphical facilities for data analysis and display
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either on-screen or on hardcopy, and a well-developed, simple and
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effective programming language which includes conditionals, loops,
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user-defined recursive functions and input and output facilities.
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'';
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pkgConfigModules = [ "libR" ];
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platforms = platforms.all;
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maintainers = with maintainers; [ jbedo ] ++ teams.sage.members;
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};
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})
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