45 lines
1.1 KiB
Nix
45 lines
1.1 KiB
Nix
{ lib, python3, fetchPypi }:
|
|
|
|
python3.pkgs.buildPythonPackage rec {
|
|
pname = "macs2";
|
|
version = "2.2.8";
|
|
format = "pyproject";
|
|
|
|
src = fetchPypi {
|
|
pname = lib.toUpper pname;
|
|
inherit version;
|
|
hash = "sha256-KgpDasidj4yUoeQQaQA3dg5eN5Ka1xnFRpbnTvhKmOA=";
|
|
};
|
|
|
|
postPatch = ''
|
|
# prevent setup.py from installing numpy
|
|
substituteInPlace setup.py \
|
|
--replace "subprocess.call([sys.executable, \"-m\", 'pip', 'install', f'numpy{numpy_requires}'],cwd=cwd)" "0"
|
|
'';
|
|
|
|
nativeBuildInputs = with python3.pkgs; [
|
|
cython
|
|
setuptools
|
|
];
|
|
|
|
propagatedBuildInputs = with python3.pkgs; [ numpy ];
|
|
|
|
nativeCheckInputs = [
|
|
python3.pkgs.unittestCheckHook
|
|
];
|
|
|
|
unittestFlagsArray = [
|
|
"-s"
|
|
"test"
|
|
];
|
|
|
|
pythonImportsCheck = [ "MACS2" ];
|
|
|
|
meta = with lib; {
|
|
description = "Model-based Analysis for ChIP-Seq";
|
|
homepage = "https://github.com/macs3-project/MACS/";
|
|
changelog = "https://github.com/macs3-project/MACS/releases/tag/v${version}";
|
|
license = licenses.bsd3;
|
|
maintainers = with maintainers; [ gschwartz ];
|
|
};
|
|
}
|