depot/third_party/nixpkgs/pkgs/applications/science/math/R/default.nix
Default email 9c6ee729d6 Project import generated by Copybara.
GitOrigin-RevId: 6cee3b5893090b0f5f0a06b4cf42ca4e60e5d222
2023-07-15 19:15:38 +02:00

135 lines
5.3 KiB
Nix

{ lib, stdenv, fetchurl, bzip2, gfortran, libX11, libXmu, libXt, libjpeg, libpng
, libtiff, ncurses, pango, pcre2, perl, readline, tcl, texLive, tk, xz, zlib
, less, texinfo, graphviz, icu, pkg-config, bison, imake, which, jdk, blas, lapack
, curl, Cocoa, Foundation, libobjc, libcxx, tzdata
, withRecommendedPackages ? true
, enableStrictBarrier ? false
, enableMemoryProfiling ? false
# R as of writing does not support outputting both .so and .a files; it outputs:
# --enable-R-static-lib conflicts with --enable-R-shlib and will be ignored
, static ? false
, testers
}:
assert (!blas.isILP64) && (!lapack.isILP64);
stdenv.mkDerivation (finalAttrs: {
pname = "R";
version = "4.3.1";
src = let
inherit (finalAttrs) pname version;
in fetchurl {
url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz";
sha256 = "sha256-jdC/JPECPG9hjDsxc4PSkbSklPQNc7mDrCL/6pnkupk=";
};
dontUseImakeConfigure = true;
nativeBuildInputs = [ pkg-config ];
buildInputs = [
bzip2 gfortran libX11 libXmu libXt libXt libjpeg libpng libtiff ncurses
pango pcre2 perl readline texLive xz zlib less texinfo graphviz icu
bison imake which blas lapack curl tcl tk jdk tzdata
] ++ lib.optionals stdenv.isDarwin [ Cocoa Foundation libobjc libcxx ];
patches = [
./no-usr-local-search-paths.patch
];
# Test of the examples for package 'tcltk' fails in Darwin sandbox. See:
# https://github.com/NixOS/nixpkgs/issues/146131
postPatch = lib.optionalString stdenv.isDarwin ''
substituteInPlace configure \
--replace "-install_name libRblas.dylib" "-install_name $out/lib/R/lib/libRblas.dylib" \
--replace "-install_name libRlapack.dylib" "-install_name $out/lib/R/lib/libRlapack.dylib" \
--replace "-install_name libR.dylib" "-install_name $out/lib/R/lib/libR.dylib"
substituteInPlace tests/Examples/Makefile.in \
--replace "test-Examples: test-Examples-Base" "test-Examples:" # do not test the examples
'';
dontDisableStatic = static;
preConfigure = ''
configureFlagsArray=(
--disable-lto
--with${lib.optionalString (!withRecommendedPackages) "out"}-recommended-packages
--with-blas="-L${blas}/lib -lblas"
--with-lapack="-L${lapack}/lib -llapack"
--with-readline
--with-tcltk --with-tcl-config="${tcl}/lib/tclConfig.sh" --with-tk-config="${tk}/lib/tkConfig.sh"
--with-cairo
--with-libpng
--with-jpeglib
--with-libtiff
--with-ICU
${lib.optionalString enableStrictBarrier "--enable-strict-barrier"}
${lib.optionalString enableMemoryProfiling "--enable-memory-profiling"}
${if static then "--enable-R-static-lib" else "--enable-R-shlib"}
AR=$(type -p ar)
AWK=$(type -p gawk)
CC=$(type -p cc)
CXX=$(type -p c++)
FC="${gfortran}/bin/gfortran" F77="${gfortran}/bin/gfortran"
JAVA_HOME="${jdk}"
RANLIB=$(type -p ranlib)
r_cv_have_curl728=yes
R_SHELL="${stdenv.shell}"
'' + lib.optionalString stdenv.isDarwin ''
--disable-R-framework
--without-x
OBJC="clang"
CPPFLAGS="-isystem ${lib.getDev libcxx}/include/c++/v1"
LDFLAGS="-L${lib.getLib libcxx}/lib"
'' + ''
)
echo >>etc/Renviron.in "TCLLIBPATH=${tk}/lib"
echo >>etc/Renviron.in "TZDIR=${tzdata}/share/zoneinfo"
'';
installTargets = [ "install" "install-info" "install-pdf" ];
# The store path to "which" is baked into src/library/base/R/unix/system.unix.R,
# but Nix cannot detect it as a run-time dependency because the installed file
# is compiled and compressed, which hides the store path.
postFixup = "echo ${which} > $out/nix-support/undetected-runtime-dependencies";
doCheck = true;
preCheck = "export HOME=$TMPDIR; export TZ=CET; bin/Rscript -e 'sessionInfo()'";
enableParallelBuilding = true;
setupHook = ./setup-hook.sh;
passthru.tests.pkg-config = testers.testMetaPkgConfig finalAttrs.finalPackage;
meta = with lib; {
homepage = "http://www.r-project.org/";
description = "Free software environment for statistical computing and graphics";
license = licenses.gpl2Plus;
longDescription = ''
GNU R is a language and environment for statistical computing and
graphics that provides a wide variety of statistical (linear and
nonlinear modelling, classical statistical tests, time-series
analysis, classification, clustering, ...) and graphical
techniques, and is highly extensible. One of R's strengths is the
ease with which well-designed publication-quality plots can be
produced, including mathematical symbols and formulae where
needed. R is an integrated suite of software facilities for data
manipulation, calculation and graphical display. It includes an
effective data handling and storage facility, a suite of operators
for calculations on arrays, in particular matrices, a large,
coherent, integrated collection of intermediate tools for data
analysis, graphical facilities for data analysis and display
either on-screen or on hardcopy, and a well-developed, simple and
effective programming language which includes conditionals, loops,
user-defined recursive functions and input and output facilities.
'';
pkgConfigModules = [ "libR" ];
platforms = platforms.all;
maintainers = with maintainers; [ jbedo ] ++ teams.sage.members;
};
})