128 lines
3.9 KiB
Nix
128 lines
3.9 KiB
Nix
{ lib
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, stdenv
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, fetchurl
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, removeReferencesTo
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, cppSupport ? false
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, fortranSupport ? false
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, fortran
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, zlibSupport ? true
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, zlib
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, szipSupport ? false
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, szip
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, mpiSupport ? false
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, mpi
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, enableShared ? !stdenv.hostPlatform.isStatic
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, javaSupport ? false
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, jdk
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, usev110Api ? false
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, threadsafe ? false
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, python3
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}:
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# cpp and mpi options are mutually exclusive
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# (--enable-unsupported could be used to force the build)
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assert !cppSupport || !mpiSupport;
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let inherit (lib) optional optionals; in
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stdenv.mkDerivation rec {
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version = "1.14.1-2";
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pname = "hdf5"
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+ lib.optionalString cppSupport "-cpp"
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+ lib.optionalString fortranSupport "-fortran"
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+ lib.optionalString mpiSupport "-mpi"
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+ lib.optionalString threadsafe "-threadsafe";
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src = fetchurl {
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url = let
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majorMinor = lib.versions.majorMinor version;
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majorMinorPatch = with lib.versions; "${major version}.${minor version}.${patch version}";
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in "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${majorMinor}/hdf5-${majorMinorPatch}/src/hdf5-${version}.tar.bz2";
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sha256 = "sha256-BsoUHRo8MStdfMSCahJzcpOuExAxdIhhaJ9qLsghnb0=";
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};
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passthru = {
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inherit
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cppSupport
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fortranSupport
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fortran
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zlibSupport
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zlib
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szipSupport
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szip
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mpiSupport
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mpi
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;
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};
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outputs = [ "out" "dev" ];
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nativeBuildInputs = [ removeReferencesTo ]
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++ optional fortranSupport fortran;
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buildInputs = optional fortranSupport fortran
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++ optional szipSupport szip
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++ optional javaSupport jdk;
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propagatedBuildInputs = optional zlibSupport zlib
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++ optional mpiSupport mpi;
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configureFlags = optional cppSupport "--enable-cxx"
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++ optional fortranSupport "--enable-fortran"
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++ optional szipSupport "--with-szlib=${szip}"
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++ optionals mpiSupport [ "--enable-parallel" "CC=${mpi}/bin/mpicc" ]
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++ optional enableShared "--enable-shared"
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++ optional javaSupport "--enable-java"
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++ optional usev110Api "--with-default-api-version=v110"
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# hdf5 hl (High Level) library is not considered stable with thread safety and should be disabled.
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++ optionals threadsafe [ "--enable-threadsafe" "--disable-hl" ];
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patches = [
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# Avoid non-determinism in autoconf build system:
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# - build time
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# - build user
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# - uname -a (kernel version)
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# Can be dropped once/if we switch to cmake.
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./hdf5-more-determinism.patch
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];
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postInstall = ''
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find "$out" -type f -exec remove-references-to -t ${stdenv.cc} '{}' +
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moveToOutput 'bin/h5cc' "''${!outputDev}"
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moveToOutput 'bin/h5c++' "''${!outputDev}"
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moveToOutput 'bin/h5fc' "''${!outputDev}"
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moveToOutput 'bin/h5pcc' "''${!outputDev}"
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'';
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# Remove reference to /build, which get introduced
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# into AM_CPPFLAGS since hdf5-1.14.0. Cmake of various
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# packages using HDF5 gets confused trying access the non-existent path.
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postFixup = ''
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for i in h5cc h5pcc h5c++; do
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if [ -f $dev/bin/$i ]; then
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substituteInPlace $dev/bin/$i --replace \
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'-I/build/hdf5-${version}/src/H5FDsubfiling' ""
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fi
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done
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'';
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enableParallelBuilding = true;
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passthru.tests = {
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inherit (python3.pkgs) h5py;
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};
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meta = with lib; {
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description = "Data model, library, and file format for storing and managing data";
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longDescription = ''
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HDF5 supports an unlimited variety of datatypes, and is designed for flexible and efficient
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I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing
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applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and
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applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
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'';
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license = licenses.bsd3; # Lawrence Berkeley National Labs BSD 3-Clause variant
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maintainers = [ maintainers.markuskowa ];
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homepage = "https://www.hdfgroup.org/HDF5/";
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platforms = platforms.unix;
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};
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}
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