46 lines
1.1 KiB
Nix
46 lines
1.1 KiB
Nix
{
|
|
lib,
|
|
stdenv,
|
|
fetchFromGitHub,
|
|
zlib,
|
|
bzip2,
|
|
xz,
|
|
}:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "freebayes";
|
|
version = "1.3.1";
|
|
|
|
src = fetchFromGitHub {
|
|
name = "freebayes-${version}-src";
|
|
owner = "ekg";
|
|
repo = "freebayes";
|
|
rev = "v${version}";
|
|
sha256 = "035nriknjqq8gvil81vvsmvqwi35v80q8h1cw24vd1gdyn1x7bys";
|
|
fetchSubmodules = true;
|
|
};
|
|
|
|
buildInputs = [
|
|
zlib
|
|
bzip2
|
|
xz
|
|
];
|
|
|
|
# Workaround build failure on -fno-common toolchains like upstream
|
|
# gcc-10. Otherwise build fails as:
|
|
# ld: foomatic_rip-options.o:/build/foomatic-filters-4.0.17/options.c:49: multiple definition of `cupsfilter';
|
|
# foomatic_rip-foomaticrip.o:/build/foomatic-filters-4.0.17/foomaticrip.c:158: first defined here
|
|
env.NIX_CFLAGS_COMPILE = "-fcommon";
|
|
|
|
installPhase = ''
|
|
install -vD bin/freebayes bin/bamleftalign scripts/* -t $out/bin
|
|
'';
|
|
|
|
meta = with lib; {
|
|
description = "Bayesian haplotype-based polymorphism discovery and genotyping";
|
|
license = licenses.mit;
|
|
homepage = "https://github.com/ekg/freebayes";
|
|
maintainers = with maintainers; [ jdagilliland ];
|
|
platforms = [ "x86_64-linux" ];
|
|
};
|
|
}
|