35 lines
1 KiB
Nix
35 lines
1 KiB
Nix
{lib, stdenv, fetchurl, jre, unzip, makeWrapper}:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "snpeff";
|
|
version = "4.3t";
|
|
|
|
src = fetchurl {
|
|
url = "mirror://sourceforge/project/snpeff/snpEff_v${builtins.replaceStrings [ "." ] [ "_" ] version}_core.zip";
|
|
sha256 = "0i12mv93bfv8xjwc3rs2x73d6hkvi7kgbbbx3ry984l3ly4p6nnm";
|
|
};
|
|
|
|
nativeBuildInputs = [ makeWrapper unzip ];
|
|
buildInputs = [ jre ];
|
|
|
|
sourceRoot = "snpEff";
|
|
|
|
installPhase = ''
|
|
mkdir -p $out/libexec/snpeff
|
|
cp *.jar *.config $out/libexec/snpeff
|
|
|
|
mkdir -p $out/bin
|
|
makeWrapper ${jre}/bin/java $out/bin/snpeff --add-flags "-jar $out/libexec/snpeff/snpEff.jar"
|
|
makeWrapper ${jre}/bin/java $out/bin/snpsift --add-flags "-jar $out/libexec/snpeff/SnpSift.jar"
|
|
'';
|
|
|
|
meta = with lib; {
|
|
description = "Genetic variant annotation and effect prediction toolbox";
|
|
license = licenses.lgpl3;
|
|
homepage = "https://snpeff.sourceforge.net/";
|
|
sourceProvenance = with sourceTypes; [ binaryBytecode ];
|
|
maintainers = with maintainers; [ jbedo ];
|
|
platforms = platforms.all;
|
|
};
|
|
|
|
}
|