104 lines
2.9 KiB
Nix
104 lines
2.9 KiB
Nix
{ lib
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, stdenv
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, fetchFromGitHub
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, cmake
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, enableVTK ? true
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, vtk
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, ApplicationServices
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, Cocoa
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, DarwinTools # sw_vers
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, libiconv
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, enablePython ? false
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, python ? null
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, swig
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, expat
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, libuuid
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, openjpeg
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, zlib
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, pkg-config
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}:
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stdenv.mkDerivation rec {
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pname = "gdcm";
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version = "3.0.24";
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src = fetchFromGitHub {
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owner = "malaterre";
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repo = "GDCM";
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rev = "refs/tags/v${version}";
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hash = "sha256-Zlb6UCP4aFZOJJNhFQBBrwzst+f37gs1zaCBMTOUgZE=";
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};
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cmakeFlags = [
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"-DGDCM_BUILD_APPLICATIONS=ON"
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"-DGDCM_BUILD_SHARED_LIBS=ON"
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"-DGDCM_BUILD_TESTING=ON"
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"-DGDCM_USE_SYSTEM_EXPAT=ON"
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"-DGDCM_USE_SYSTEM_ZLIB=ON"
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"-DGDCM_USE_SYSTEM_UUID=ON"
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"-DGDCM_USE_SYSTEM_OPENJPEG=ON"
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# hack around usual "`RUNTIME_DESTINATION` must not be an absolute path" issue:
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"-DCMAKE_INSTALL_LIBDIR=lib"
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"-DCMAKE_INSTALL_BINDIR=bin"
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"-DCMAKE_INSTALL_INCLUDEDIR=include"
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] ++ lib.optionals enableVTK [
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"-DGDCM_USE_VTK=ON"
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] ++ lib.optionals enablePython [
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"-DGDCM_WRAP_PYTHON:BOOL=ON"
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"-DGDCM_INSTALL_PYTHONMODULE_DIR=${placeholder "out"}/${python.sitePackages}"
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];
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nativeBuildInputs = [
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cmake
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pkg-config
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] ++ lib.optional stdenv.hostPlatform.isDarwin DarwinTools;
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buildInputs = [
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expat
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libuuid
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openjpeg
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zlib
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] ++ lib.optionals enableVTK [
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vtk
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] ++ lib.optionals stdenv.hostPlatform.isDarwin [
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ApplicationServices
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Cocoa
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libiconv
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] ++ lib.optionals enablePython [ swig python ];
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disabledTests = [
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# require networking:
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"TestEcho"
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"TestFind"
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"gdcmscu-echo-dicomserver"
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"gdcmscu-find-dicomserver"
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# seemingly ought to be disabled when the test data submodule is not present:
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"TestvtkGDCMImageReader2_3"
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"TestSCUValidation"
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# errors because 3 classes not wrapped:
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"TestWrapPython"
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] ++ lib.optionals (stdenv.hostPlatform.isAarch64 && stdenv.hostPlatform.isLinux) [
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"TestRescaler2"
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];
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checkPhase = ''
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runHook preCheck
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ctest --exclude-regex '^(${lib.concatStringsSep "|" disabledTests})$'
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runHook postCheck
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'';
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doCheck = true;
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# note that when the test data is available to the build via `fetchSubmodules = true`,
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# a number of additional but much slower tests are enabled
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meta = with lib; {
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description = "Grassroots cross-platform DICOM implementation";
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longDescription = ''
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Grassroots DICOM (GDCM) is an implementation of the DICOM standard designed to be open source so that researchers may access clinical data directly.
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GDCM includes a file format definition and a network communications protocol, both of which should be extended to provide a full set of tools for a researcher or small medical imaging vendor to interface with an existing medical database.
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'';
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homepage = "https://gdcm.sourceforge.net/";
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license = with licenses; [ bsd3 asl20 ];
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maintainers = with maintainers; [ tfmoraes ];
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platforms = platforms.all;
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};
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}
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