54 lines
1.2 KiB
Nix
54 lines
1.2 KiB
Nix
{
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lib,
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stdenv,
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buildPythonPackage,
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fetchFromGitHub,
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pytestCheckHook,
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pythonOlder,
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nix-update-script,
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setuptools,
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paup,
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paupIntegration ? false,
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}:
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let
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paupPath = if paupIntegration then lib.getExe paup else "NONE";
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in
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buildPythonPackage rec {
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pname = "dendropy";
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version = "5.0.2";
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pyproject = true;
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build-system = [ setuptools ];
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src = fetchFromGitHub {
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owner = "jeetsukumaran";
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repo = "dendropy";
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rev = "refs/tags/v${version}";
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hash = "sha256-OiFei/6226FDtL4w1XrXL2OVn3/hfQwnIhTzM4OneKc=";
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};
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postPatch = ''
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substituteInPlace setup.py \
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--replace '["pytest-runner"],' '[],'
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substituteInPlace src/dendropy/interop/paup.py \
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--replace 'PAUP_PATH = os.environ.get(metavar.DENDROPY_PAUP_PATH_ENVAR, "paup")' 'PAUP_PATH = os.environ.get(metavar.DENDROPY_PAUP_PATH_ENVAR, "${paupPath}")'
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'';
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nativeCheckInputs = [ pytestCheckHook ];
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pythonImportsCheck = [ "dendropy" ];
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passthru.updateScript = nix-update-script { };
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meta = {
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description = "Python library for phylogenetic computing";
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homepage = "https://jeetsukumaran.github.io/DendroPy/";
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license = lib.licenses.bsd3;
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maintainers = with lib.maintainers; [
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unode
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pandapip1
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];
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};
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}
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