34 lines
873 B
Nix
34 lines
873 B
Nix
{ stdenv, fetchurl, zlib, htslib, perl, ncurses ? null }:
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stdenv.mkDerivation rec {
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pname = "samtools";
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version = "1.11";
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src = fetchurl {
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url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2";
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sha256 = "1dp5wknak4arnw5ghhif9mmljlfnw5bgm91wib7z0j8wdjywx0z2";
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};
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nativeBuildInputs = [ perl ];
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buildInputs = [ zlib ncurses htslib ];
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configureFlags = [ "--with-htslib=${htslib}" ]
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++ stdenv.lib.optional (ncurses == null) "--without-curses";
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preCheck = ''
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patchShebangs test/
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'';
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enableParallelBuilding = true;
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doCheck = true;
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meta = with stdenv.lib; {
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description = "Tools for manipulating SAM/BAM/CRAM format";
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license = licenses.mit;
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homepage = "http://www.htslib.org/";
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platforms = platforms.unix;
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maintainers = with maintainers; [ mimame unode ];
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};
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}
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