41 lines
1.2 KiB
Nix
41 lines
1.2 KiB
Nix
{lib, stdenv, fetchpatch, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, lzma, pkg-config}:
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stdenv.mkDerivation rec {
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pname = "octopus";
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version = "0.7.1";
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src = fetchFromGitHub {
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owner = "luntergroup";
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repo = "octopus";
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rev = "v${version}";
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sha256 = "sha256-TZ57uKTZ87FWpLNGPY8kbML1EDM8fnEFbXR+Z3dmiao=";
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};
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patches = [
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# Backport TZ patchs (https://github.com/luntergroup/octopus/issues/149)
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(fetchpatch {
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url = "https://github.com/luntergroup/octopus/commit/3dbd8cc33616129ad356e99a4dae82e4f6702250.patch";
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sha256 = "sha256-UCufVU9x+L1zCEhkr/48KFYRvh8w26w8Jr+O+wULKK8=";
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})
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(fetchpatch {
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url = "https://github.com/luntergroup/octopus/commit/af5a66a2792bd098fb53eb79fb4822625f09305e.patch";
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sha256 = "sha256-r8jv6EZHfTWVLYUBau3F+ilOd9IeH8rmatorEY5LXP4=";
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})
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];
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nativeBuildInputs = [ cmake pkg-config ];
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buildInputs = [ boost gmp htslib zlib lzma ];
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postInstall = ''
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mkdir $out/bin
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mv $out/octopus $out/bin
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'';
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meta = with lib; {
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description = "Bayesian haplotype-based mutation calling";
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license = licenses.mit;
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homepage = "https://github.com/luntergroup/octopus";
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.x86_64;
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};
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}
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