52 lines
1.4 KiB
Nix
52 lines
1.4 KiB
Nix
{ lib, python3Packages }:
|
|
|
|
python3Packages.buildPythonApplication rec {
|
|
pname = "snakemake";
|
|
version = "6.10.0";
|
|
|
|
propagatedBuildInputs = with python3Packages; [
|
|
appdirs
|
|
configargparse
|
|
connection-pool
|
|
datrie
|
|
docutils
|
|
filelock
|
|
GitPython
|
|
jinja2
|
|
jsonschema
|
|
nbformat
|
|
networkx
|
|
psutil
|
|
pulp
|
|
pygraphviz
|
|
pyyaml
|
|
ratelimiter
|
|
requests
|
|
smart-open
|
|
stopit
|
|
tabulate
|
|
toposort
|
|
wrapt
|
|
];
|
|
|
|
src = python3Packages.fetchPypi {
|
|
inherit pname version;
|
|
sha256 = "199a86c8d1fcfdb88c4271a1507b0ab371a15bc407f2dad9b0ab8c43438adff8";
|
|
};
|
|
|
|
doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json
|
|
|
|
meta = with lib; {
|
|
homepage = "https://snakemake.github.io";
|
|
license = licenses.mit;
|
|
description = "Python-based execution environment for make-like workflows";
|
|
longDescription = ''
|
|
Snakemake is a workflow management system that aims to reduce the complexity of
|
|
creating workflows by providing a fast and comfortable execution environment,
|
|
together with a clean and readable specification language in Python style. Snakemake
|
|
workflows are essentially Python scripts extended by declarative code to define
|
|
rules. Rules describe how to create output files from input files.
|
|
'';
|
|
maintainers = with maintainers; [ helkafen renatoGarcia veprbl ];
|
|
};
|
|
}
|