41 lines
869 B
Nix
41 lines
869 B
Nix
{ lib
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, stdenv
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, fetchFromGitHub
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, cmake
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, gtest
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, which
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}:
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stdenv.mkDerivation rec {
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pname = "genmap";
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version = "1.3.0";
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src = fetchFromGitHub {
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owner = "cpockrandt";
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repo = "genmap";
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rev = "genmap-v${version}";
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fetchSubmodules = true;
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hash = "sha256-7sIKBRMNzyCrZ/c2nXkknb6a5YsXe6DRE2IFhp6AviY=";
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};
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nativeBuildInputs = [ cmake ];
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doCheck = true;
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patches = [ ./gtest.patch ];
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nativeCheckInputs = [ gtest which ];
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preCheck = "make genmap_algo_test";
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# disable benchmarks
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preConfigure = ''
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echo > benchmarks/CMakeLists.txt
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'';
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meta = {
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description = "Ultra-fast computation of genome mappability";
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mainProgram = "genmap";
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license = lib.licenses.bsd3;
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homepage = "https://github.com/cpockrandt/genmap";
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maintainers = with lib.maintainers; [ jbedo ];
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platforms = lib.platforms.unix;
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};
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}
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