43 lines
1.3 KiB
Nix
43 lines
1.3 KiB
Nix
{
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lib,
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stdenv,
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fetchFromGitHub,
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runCommand,
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fastahack,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "fastahack";
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version = "1.0.0";
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src = fetchFromGitHub {
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owner = "ekg";
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repo = "fastahack";
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rev = "refs/tags/v${finalAttrs.version}";
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hash = "sha256-SWu2iRwNgdhsn4sH9/3jPNG3+l1xFAHXPq5/ODVd4WY=";
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};
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installFlags = [ "PREFIX=${placeholder "out"}" ];
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passthru.tests = {
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simple = runCommand "${finalAttrs.pname}-test" { } ''
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mkdir $out
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cp ${fastahack.src}/tests/* $out
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grep -v ERROR <(${lib.getExe fastahack} $out/correct.fasta 2>&1)
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grep -v ERROR <(${lib.getExe fastahack} $out/crlf.fasta 2>&1)
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grep "ERROR: embedded newline " <(${lib.getExe fastahack} $out/embedded_newline.fasta 2>&1)
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grep "ERROR: mismatched line lengths" <(${lib.getExe fastahack} $out/mismatched_lines.fasta 2>&1)
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grep -v ERROR <(${lib.getExe fastahack} $out/trailing_newlines.fasta 2>&1)
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'';
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};
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meta = {
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description = "Utilities for indexing and sequence extraction from FASTA files";
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homepage = "https://github.com/ekg/fastahack";
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changelog = "https://github.com/ekg/fastahack/releases/tag/v${finalAttrs.version}";
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license = lib.licenses.mit;
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maintainers = with lib.maintainers; [ natsukium ];
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mainProgram = "fastahack";
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platforms = lib.platforms.unix;
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};
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})
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