52 lines
982 B
Nix
52 lines
982 B
Nix
{ lib
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, buildPythonPackage
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, fetchPypi
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, nose
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, numpy
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, setuptools-scm
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, six
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, glibcLocales
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, pytestCheckHook
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}:
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buildPythonPackage rec {
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pname = "pyfaidx";
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version = "0.7.1";
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format = "setuptools";
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src = fetchPypi {
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inherit pname version;
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sha256 = "sha256-OXdjK3/SkEn4sRA11+neoOLF2pwjX5grTD+uBv8foj8=";
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};
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nativeBuildInputs = [
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setuptools-scm
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];
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propagatedBuildInputs = [
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six
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];
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checkInputs = [
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glibcLocales
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nose
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numpy
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pytestCheckHook
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];
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disabledTestPaths = [
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# FileNotFoundError: [Errno 2] No such file or directory: 'data/genes.fasta.gz'
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"tests/test_Fasta_bgzip.py"
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];
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pythonImportsCheck = [
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"pyfaidx"
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];
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meta = with lib; {
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homepage = "https://github.com/mdshw5/pyfaidx";
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description = "Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index";
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license = licenses.bsd3;
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maintainers = with maintainers; [ jbedo ];
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};
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}
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