54 lines
1.1 KiB
Nix
54 lines
1.1 KiB
Nix
{ lib
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, autoPatchelfHook
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, fetchFromGitHub
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, python3Packages
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, wget
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, zlib
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}:
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python3Packages.buildPythonApplication rec {
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pname = "eggnog-mapper";
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version = "2.1.7";
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src = fetchFromGitHub {
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owner = "eggnogdb";
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repo = pname;
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rev = version;
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hash = "sha256-auVD/r8m3TAB1KYMQ7Sae23eDg6LRx/daae0505cjwU=";
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};
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postPatch = ''
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# Not a great solution...
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substituteInPlace setup.cfg \
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--replace "==" ">="
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'';
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nativeBuildInputs = [
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autoPatchelfHook
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];
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buildInputs = [
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zlib
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];
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propagatedBuildInputs = [
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wget
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] ++ (with python3Packages; [
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biopython
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psutil
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XlsxWriter
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]);
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# Tests rely on some of the databases being available, which is not bundled
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# with this package as (1) in total, they represent >100GB of data, and (2)
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# the user can download only those that interest them.
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doCheck = false;
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meta = with lib; {
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description = "Fast genome-wide functional annotation through orthology assignment";
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license = licenses.gpl2;
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homepage = "https://github.com/eggnogdb/eggnog-mapper/wiki";
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maintainers = with maintainers; [ luispedro ];
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platforms = platforms.all;
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};
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}
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