46 lines
1.1 KiB
Nix
46 lines
1.1 KiB
Nix
{lib, stdenv, fetchFromGitHub, nim, htslib, pcre}:
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let
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hts-nim = fetchFromGitHub {
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owner = "brentp";
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repo = "hts-nim";
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rev = "v0.3.4";
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sha256 = "0670phk1bq3l9j2zaa8i5wcpc5dyfrc0l2a6c21g0l2mmdczffa7";
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};
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docopt = fetchFromGitHub {
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owner = "docopt";
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repo = "docopt.nim";
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rev = "v0.6.7";
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sha256 = "1ga7ckg21fzwwvh26jp2phn2h3pvkn8g8sm13dxif33rp471bv37";
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};
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in stdenv.mkDerivation rec {
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pname = "mosdepth";
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version = "0.3.1";
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src = fetchFromGitHub {
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owner = "brentp";
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repo = "mosdepth";
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rev = "v${version}";
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sha256 = "1kcrvamrafz1m0s7mlbhaay8jyg97l1w37p6syl36r2m1plmwxjd";
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};
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nativeBuildInputs = [ nim ];
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buildInputs = [ htslib pcre ];
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buildPhase = ''
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HOME=$TMPDIR
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nim -p:${hts-nim}/src -p:${docopt}/src c --nilseqs:on -d:release mosdepth.nim
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'';
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installPhase = "install -Dt $out/bin mosdepth";
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meta = with lib; {
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description = "fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing";
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license = licenses.mit;
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homepage = "https://github.com/brentp/mosdepth";
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.linux;
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};
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}
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