depot/third_party/nixpkgs/pkgs/applications/science/biology/jbrowse/default.nix
Default email bcb2f287e1 Project import generated by Copybara.
GitOrigin-RevId: d603719ec6e294f034936c0d0dc06f689d91b6c3
2024-06-20 20:27:18 +05:30

38 lines
1.2 KiB
Nix

{ lib, fetchurl, appimageTools, wrapGAppsHook3 }:
let
pname = "jbrowse";
version = "2.11.2";
src = fetchurl {
url = "https://github.com/GMOD/jbrowse-components/releases/download/v${version}/jbrowse-desktop-v${version}-linux.AppImage";
sha256 = "sha256-7kZsK3vYgxubgtoIG1dByHgEBOlh9GUq+i3u/1eo0/o=";
};
appimageContents = appimageTools.extractType2 {
inherit pname version src;
};
in
appimageTools.wrapType2 {
inherit pname version src;
unshareIpc = false;
extraInstallCommands = ''
mv $out/bin/jbrowse $out/bin/jbrowse-desktop
install -m 444 -D ${appimageContents}/jbrowse-desktop.desktop $out/share/applications/jbrowse-desktop.desktop
install -m 444 -D ${appimageContents}/jbrowse-desktop.png \
$out/share/icons/hicolor/512x512/apps/jbrowse-desktop.png
substituteInPlace $out/share/applications/jbrowse-desktop.desktop \
--replace 'Exec=AppRun --no-sandbox' 'Exec=jbrowse-desktop'
'';
meta = with lib; {
description = "Next-generation genome browser";
mainProgram = "jbrowse-desktop";
homepage = "https://jbrowse.org/jb2/";
license = licenses.asl20;
maintainers = with maintainers; [ benwbooth ];
platforms = [ "x86_64-linux" ];
};
}