56 lines
1.2 KiB
Nix
56 lines
1.2 KiB
Nix
{ stdenv
|
|
, lib
|
|
, fetchurl
|
|
, autoPatchelfHook
|
|
, libidn
|
|
, zlib
|
|
, bzip2
|
|
}:
|
|
|
|
|
|
let
|
|
libidn11 = libidn.overrideAttrs (old: {
|
|
pname = "libidn";
|
|
version = "1.34";
|
|
src = fetchurl {
|
|
url = "mirror://gnu/libidn/libidn-1.34.tar.gz";
|
|
sha256 = "0g3fzypp0xjcgr90c5cyj57apx1cmy0c6y9lvw2qdcigbyby469p";
|
|
};
|
|
});
|
|
|
|
in
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "sratoolkit";
|
|
version = "2.11.3";
|
|
|
|
src = fetchurl {
|
|
url = "https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${version}/sratoolkit.${version}-ubuntu64.tar.gz";
|
|
sha256 = "1590lc4cplxr3lhjqci8fjncy67imn2h14qd2l87chmhjh243qvx";
|
|
};
|
|
|
|
nativeBuildInputs = [
|
|
autoPatchelfHook
|
|
];
|
|
|
|
buildInputs = [
|
|
libidn11
|
|
zlib
|
|
bzip2
|
|
stdenv.cc.cc.lib
|
|
];
|
|
|
|
sourceRoot = "sratoolkit.${version}-ubuntu64/bin";
|
|
|
|
installPhase = ''
|
|
find -L . -executable -type f -! -name "*remote-fuser*" -exec install -m755 -D {} $out/bin/{} \;
|
|
'';
|
|
|
|
meta = with lib; {
|
|
homepage = "https://github.com/ncbi/sra-tools";
|
|
description = "SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives";
|
|
license = licenses.ncbiPd;
|
|
maintainers = with maintainers; [ thyol ];
|
|
platforms = [ "x86_64-linux" ];
|
|
};
|
|
}
|