51 lines
1.2 KiB
Nix
51 lines
1.2 KiB
Nix
{ lib
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, fetchFromGitHub
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, python3Packages
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, zlib
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, curl
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, libdeflate
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, bash
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, coreutils
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}:
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python3Packages.buildPythonApplication rec {
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pname = "flye";
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version = "2.9.4";
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src = fetchFromGitHub {
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owner = "fenderglass";
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repo = "flye";
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rev = "refs/tags/${version}";
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hash = "sha256-lwiY0VTEsLMMXt1VowsS3jj44v30Z766xNRwQtQKr10=";
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};
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nativeCheckInputs = [ python3Packages.pytestCheckHook ];
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propagatedBuildInputs = [ coreutils ];
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buildInputs = [
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zlib
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curl
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libdeflate
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];
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patches = [ ./aarch64-fix.patch ];
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postPatch = ''
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substituteInPlace flye/polishing/alignment.py \
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--replace-fail "/bin/bash" "${lib.getExe bash}"
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substituteInPlace flye/tests/test_toy.py \
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--replace-fail "find_executable(\"flye" "find_executable(\"$out/bin/flye" \
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--replace-fail "[\"flye" "[\"$out/bin/flye"
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'';
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meta = with lib; {
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description = "De novo assembler for single molecule sequencing reads using repeat graphs";
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homepage = "https://github.com/fenderglass/Flye";
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license = licenses.bsd3;
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platforms = platforms.unix;
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mainProgram = "flye";
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maintainers = with maintainers; [ assistant ];
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};
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}
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