58 lines
1.5 KiB
Nix
58 lines
1.5 KiB
Nix
{
|
|
lib,
|
|
stdenv,
|
|
fetchFromGitHub,
|
|
fetchpatch,
|
|
cmake,
|
|
pkg-config,
|
|
bzip2,
|
|
libxml2,
|
|
swig,
|
|
}:
|
|
stdenv.mkDerivation (attrs: {
|
|
pname = "libsbml";
|
|
version = "5.20.2";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "sbmlteam";
|
|
repo = "libsbml";
|
|
rev = "v${attrs.version}";
|
|
hash = "sha256-8JT2r0zuf61VewtZaOAccaOUmDlQPnllA0fXE9rT5X8=";
|
|
};
|
|
|
|
patches = [
|
|
# This should be in next release, remember to remove fetchpatch
|
|
(fetchpatch { # https://github.com/sbmlteam/libsbml/pull/358
|
|
name = "fix-xmlerror-conversion.patch";
|
|
url = "https://github.com/sbmlteam/libsbml/commit/de2f77ee6766fe933a1472200f5e08e7c5ba6f8c.patch";
|
|
hash = "sha256-uirG6XJ+w0hqBUEAGDnzhHoVtJVRdN1eqBYeneKMBao=";
|
|
})
|
|
];
|
|
|
|
nativeBuildInputs = [
|
|
cmake
|
|
pkg-config
|
|
swig
|
|
];
|
|
|
|
buildInputs = [
|
|
bzip2.dev
|
|
libxml2
|
|
];
|
|
|
|
# libSBML doesn't always make use of pkg-config
|
|
cmakeFlags = [
|
|
"-DLIBXML_INCLUDE_DIR=${lib.getDev libxml2}/include/libxml2"
|
|
"-DLIBXML_LIBRARY=${lib.getLib libxml2}/lib/libxml2${stdenv.hostPlatform.extensions.sharedLibrary}"
|
|
"-DPKG_CONFIG_EXECUTABLE=${lib.getBin pkg-config}/bin/pkg-config"
|
|
"-DSWIG_EXECUTABLE=${lib.getBin swig}/bin/swig"
|
|
];
|
|
|
|
meta = with lib; {
|
|
description = "Library for manipulating Systems Biology Markup Language (SBML)";
|
|
homepage = "https://github.com/sbmlteam/libsbml";
|
|
license = licenses.lgpl21Only;
|
|
maintainers = [maintainers.kupac];
|
|
platforms = platforms.all;
|
|
};
|
|
})
|