58 lines
1.3 KiB
Nix
58 lines
1.3 KiB
Nix
{ lib
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, stdenv
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, buildPythonPackage
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, fetchFromGitHub
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, cython
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, gcc
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, click
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, pytestCheckHook
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, pythonOlder
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, setuptools
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}:
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buildPythonPackage rec {
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pname = "primer3";
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version = "2.0.3";
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pyproject = true;
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disabled = pythonOlder "3.7";
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src = fetchFromGitHub {
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owner = "libnano";
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repo = "primer3-py";
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rev = "refs/tags/v${version}";
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hash = "sha256-O8BFjkjG9SfknSrK34s9EJnqTrtCf4zW9A+N+/MHl2w=";
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};
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nativeBuildInputs = [
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cython
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setuptools
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] ++ lib.optionals stdenv.isDarwin [
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gcc
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];
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nativeCheckInputs = [
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click
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pytestCheckHook
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];
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# We are not sure why exactly this is need. It seems `pytestCheckHook`
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# doesn't find extension modules installed in $out/${python.sitePackages},
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# and the tests rely upon them. This was initially reported upstream at
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# https://github.com/libnano/primer3-py/issues/120 and we investigate this
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# downstream at: https://github.com/NixOS/nixpkgs/issues/255262.
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preCheck = ''
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python setup.py build_ext --inplace
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'';
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pythonImportsCheck = [
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"primer3"
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];
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meta = with lib; {
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description = "Oligo analysis and primer design";
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homepage = "https://github.com/libnano/primer3-py";
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changelog = "https://github.com/libnano/primer3-py/blob/v${version}/CHANGES";
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license = with licenses; [ gpl2Only ];
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maintainers = with maintainers; [ fab ];
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};
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}
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