68 lines
1.3 KiB
Nix
68 lines
1.3 KiB
Nix
{ lib
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, buildPythonPackage
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, pythonOlder
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, fetchFromGitHub
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, pytestCheckHook
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, future
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, numpy
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, pillow
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, fetchpatch
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, scipy
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, scikit-learn
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, scikit-image
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, threadpoolctl
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}:
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buildPythonPackage rec {
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pname = "batchgenerators";
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version = "0.25";
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format = "setuptools";
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disabled = pythonOlder "3.7";
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src = fetchFromGitHub {
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owner = "MIC-DKFZ";
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repo = pname;
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rev = "v${version}";
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hash = "sha256-L2mWH2t8PN9o1M67KDdl1Tj2ZZ02MY4icsJY2VNrj3A=";
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};
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propagatedBuildInputs = [
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future
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numpy
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pillow
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scipy
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scikit-learn
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scikit-image
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threadpoolctl
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];
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# see https://github.com/MIC-DKFZ/batchgenerators/pull/78
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postPatch = ''
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substituteInPlace setup.py \
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--replace '"unittest2",' ""
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'';
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nativeCheckInputs = [
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pytestCheckHook
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];
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# see https://github.com/MIC-DKFZ/batchgenerators/pull/78
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disabledTestPaths = [ "tests/test_axis_mirroring.py" ];
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pythonImportsCheck = [
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"batchgenerators"
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"batchgenerators.augmentations"
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"batchgenerators.dataloading"
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"batchgenerators.datasets"
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"batchgenerators.transforms"
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"batchgenerators.utilities"
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];
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meta = with lib; {
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description = "2D and 3D image data augmentation for deep learning";
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homepage = "https://github.com/MIC-DKFZ/batchgenerators";
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license = licenses.asl20;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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