44 lines
1.4 KiB
Nix
44 lines
1.4 KiB
Nix
{ lib, stdenv, fetchFromGitHub, cmake, zlib }:
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stdenv.mkDerivation rec {
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pname = "diamond";
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version = "0.8.36";
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src = fetchFromGitHub {
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owner = "bbuchfink";
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repo = "diamond";
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rev = "v${version}";
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sha256 = "sha256-7uqOQOzkYN0RNwKBGUZ/Ny5NVZMoGByOk+GUvjdBzck=";
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};
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patches = [
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./diamond-0.8.36-no-warning.patch
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];
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nativeBuildInputs = [ cmake ];
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buildInputs = [ zlib ];
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meta = with lib; {
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description = "Accelerated BLAST compatible local sequence aligner";
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longDescription = ''
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A sequence aligner for protein and translated DNA
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searches and functions as a drop-in replacement for the NCBI BLAST
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software tools. It is suitable for protein-protein search as well as
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DNA-protein search on short reads and longer sequences including contigs
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and assemblies, providing a speedup of BLAST ranging up to x20,000.
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DIAMOND is developed by Benjamin Buchfink. Feel free to contact him for support (Email Twitter).
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If you use DIAMOND in published research, please cite
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B. Buchfink, Xie C., D. Huson,
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"Fast and sensitive protein alignment using DIAMOND",
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Nature Methods 12, 59-60 (2015).
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'';
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homepage = "https://github.com/bbuchfink/diamond";
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license = {
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fullName = "University of Tuebingen, Benjamin Buchfink";
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url = "https://raw.githubusercontent.com/bbuchfink/diamond/master/src/COPYING";
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};
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maintainers = [ ];
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};
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}
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