34 lines
1.3 KiB
Nix
34 lines
1.3 KiB
Nix
{ lib, stdenv, fetchFromGitHub, cmake, zlib }:
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stdenv.mkDerivation rec {
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pname = "diamond";
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version = "2.1.8";
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src = fetchFromGitHub {
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owner = "bbuchfink";
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repo = "diamond";
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rev = "v${version}";
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sha256 = "sha256-6L/eS3shfJ33bsXo1BaCO4lKklh2KbOIO2tZsvwcjnA=";
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};
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nativeBuildInputs = [ cmake ];
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buildInputs = [ zlib ];
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meta = with lib; {
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description = "Accelerated BLAST compatible local sequence aligner";
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longDescription = ''
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DIAMOND is a sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data. The key features are:
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- Pairwise alignment of proteins and translated DNA at 100x-10,000x speed of BLAST.
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- Frameshift alignments for long read analysis.
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- Low resource requirements and suitable for running on standard desktops or laptops.
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- Various output formats, including BLAST pairwise, tabular and XML, as well as taxonomic classification.
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When using the tool in published research, please cite:
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- Buchfink B, Reuter K, Drost HG, "Sensitive protein alignments at tree-of-life scale using DIAMOND", Nature Methods 18, 366–368 (2021). doi:10.1038/s41592-021-01101-x
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'';
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homepage = "https://github.com/bbuchfink/diamond";
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license = lib.licenses.gpl3Plus;
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maintainers = with lib.maintainers; [ thyol ];
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};
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}
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