49 lines
1.1 KiB
Nix
49 lines
1.1 KiB
Nix
{ lib
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, buildPythonPackage
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, fetchPypi
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, isPy27
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, pytest
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, mock
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, dcm2niix
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, nibabel
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, pydicom
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, nipype
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, dcmstack
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, etelemetry
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, filelock
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}:
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buildPythonPackage rec {
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version = "0.8.0";
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pname = "heudiconv";
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disabled = isPy27;
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src = fetchPypi {
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inherit pname version;
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#sha256 = "0gzqqa4pzhywdbvks2qjniwhr89sgipl5k7h9hcjs7cagmy9gb05";
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sha256 = "1r6y93125mc84c09970ifps5xysp8ffp62rwlzili3q2k1m3fh4v";
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};
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postPatch = ''
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# doesn't exist as a separate package with Python 3:
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substituteInPlace heudiconv/info.py --replace "'pathlib'," ""
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'';
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propagatedBuildInputs = [
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dcm2niix nibabel pydicom nipype dcmstack etelemetry filelock
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];
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nativeCheckInputs = [ dcm2niix pytest mock ];
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# test_monitor and test_dlad require 'inotify' and 'datalad' respectively,
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# and these aren't in Nixpkgs
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checkPhase = "pytest -k 'not test_dlad and not test_monitor' heudiconv/tests";
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meta = with lib; {
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homepage = "https://heudiconv.readthedocs.io";
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description = "Flexible DICOM converter for organizing imaging data";
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license = licenses.asl20;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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