120 lines
2.6 KiB
Nix
120 lines
2.6 KiB
Nix
{ lib
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, fetchPypi
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, fetchpatch
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, buildPythonPackage
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, pythonOlder
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, blosc2
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, bzip2
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, c-blosc
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, cython
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, hdf5
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, lzo
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, numpy
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, numexpr
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, packaging
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, setuptools
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, sphinx
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# Test inputs
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, python
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, pytest
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, py-cpuinfo
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}:
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buildPythonPackage rec {
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pname = "tables";
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version = "3.9.2";
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pyproject = true;
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disabled = pythonOlder "3.8";
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-1HAmPC5QxLfIY1oNmawf8vnnBMJNceX6M8RSnn0K2cM=";
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};
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patches = [
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(fetchpatch {
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name = "numpy-1.25-compatibility.patch";
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url = "https://github.com/PyTables/PyTables/commit/337792561e5924124efd20d6fea6bbbd2428b2aa.patch";
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hash = "sha256-pz3A/jTPWXXlzr+Yl5PRUvdSAinebFsoExfek4RUHkc=";
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})
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(fetchpatch {
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name = "numexpr-2.8.5-compatibility.patch";
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url = "https://github.com/PyTables/PyTables/commit/1a235490ebe1a138da1139cfa19829b5f0a2af37.patch";
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includes = [ "tables/tests/test_queries.py" ];
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hash = "sha256-uMS+Z2Zcz68ILMQaBdIDMnCyasozCaCGOiGIyw0+Evc=";
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})
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];
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nativeBuildInputs = [
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blosc2
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cython
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setuptools
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sphinx
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];
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buildInputs = [
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bzip2
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c-blosc
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hdf5
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lzo
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];
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propagatedBuildInputs = [
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blosc2
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py-cpuinfo
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numpy
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numexpr
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packaging # uses packaging.version at runtime
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];
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# When doing `make distclean`, ignore docs
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postPatch = ''
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substituteInPlace Makefile --replace "src doc" "src"
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# Force test suite to error when unittest runner fails
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substituteInPlace tables/tests/test_suite.py \
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--replace "return 0" "assert result.wasSuccessful(); return 0" \
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--replace "return 1" "assert result.wasSuccessful(); return 1"
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substituteInPlace requirements.txt \
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--replace "cython>=0.29.21" "" \
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--replace "blosc2~=2.0.0" "blosc2"
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'';
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# Regenerate C code with Cython
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preBuild = ''
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make distclean
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'';
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setupPyBuildFlags = [
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"--hdf5=${lib.getDev hdf5}"
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"--lzo=${lib.getDev lzo}"
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"--bzip2=${lib.getDev bzip2}"
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"--blosc=${lib.getDev c-blosc}"
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];
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nativeCheckInputs = [
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pytest
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];
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preCheck = ''
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cd ..
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'';
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# Runs the light (yet comprehensive) subset of the test suite.
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# The whole "heavy" test suite supposedly takes ~4 hours to run.
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checkPhase = ''
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runHook preCheck
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${python.interpreter} -m tables.tests.test_all
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runHook postCheck
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'';
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pythonImportsCheck = [ "tables" ];
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meta = with lib; {
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description = "Hierarchical datasets for Python";
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homepage = "https://www.pytables.org/";
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changelog = "https://github.com/PyTables/PyTables/releases/tag/v${version}";
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license = licenses.bsd2;
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maintainers = with maintainers; [ drewrisinger ];
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};
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}
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