39 lines
1.1 KiB
Nix
39 lines
1.1 KiB
Nix
{ lib, stdenv, fetchFromGitHub, fetchpatch, python3, which, ldc, zlib }:
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stdenv.mkDerivation rec {
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pname = "sambamba";
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version = "0.8.0";
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src = fetchFromGitHub {
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owner = "biod";
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repo = "sambamba";
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rev = "v${version}";
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sha256 = "sha256:0kx5a0fmvv9ldz2hnh7qavgf7711kqc73zxf51k4cca4hr58zxr9";
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fetchSubmodules = true;
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};
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patches = [
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# Fixes hardcoded gcc, making clang build possible.
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(fetchpatch {
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url = "https://github.com/biod/sambamba/commit/c50a1c91e1ba062635467f197139bf6784e9be15.patch";
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sha256 = "1y0vlybmb9wpg4z1nca7m96mk9hxmvd3yrg7w8rxscj45hcqvf8q";
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})
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];
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nativeBuildInputs = [ which python3 ldc ];
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buildInputs = [ zlib ];
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# Upstream's install target is broken; copy manually
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installPhase = ''
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mkdir -p $out/bin
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cp bin/sambamba-${version} $out/bin/sambamba
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'';
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meta = with lib; {
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description = "SAM/BAM processing tool";
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homepage = "https://lomereiter.github.io/sambamba/";
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maintainers = with maintainers; [ jbedo ];
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license = with licenses; gpl2;
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platforms = platforms.x86_64;
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};
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}
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