54 lines
1 KiB
Nix
54 lines
1 KiB
Nix
{ lib
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, buildDunePackage
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, fetchurl
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, bppsuite
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, alcotest
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, angstrom-unix
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, biotk
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, core
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, gsl
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, lacaml
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, menhir
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, menhirLib
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, printbox-text
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}:
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buildDunePackage rec {
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pname = "phylogenetics";
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version = "0.3.0";
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src = fetchurl {
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url = "https://github.com/biocaml/phylogenetics/releases/download/v${version}/phylogenetics-${version}.tbz";
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hash = "sha256-3oZ9fMAXqOQ02rQ+8W8PZJWXOJLNe2qERrGOeTk3BKg=";
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};
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minimalOCamlVersion = "4.08";
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nativeCheckInputs = [ bppsuite ];
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checkInputs = [ alcotest ];
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nativeBuildInputs = [ menhir ];
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propagatedBuildInputs = [
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angstrom-unix
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biotk
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core
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gsl
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lacaml
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menhirLib
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printbox-text
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];
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checkPhase = ''
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runHook preCheck
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dune build @app/fulltest
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runHook postCheck
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'';
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doCheck = true;
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meta = with lib; {
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description = "Algorithms and datastructures for phylogenetics";
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homepage = "https://github.com/biocaml/phylogenetics";
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license = licenses.cecill-b;
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maintainers = [ maintainers.bcdarwin ];
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mainProgram = "phylosim";
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};
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}
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