56 lines
1.4 KiB
Nix
56 lines
1.4 KiB
Nix
{ lib, python311, fetchpatch, fetchPypi }:
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# pin python311 because macs2 does not support python 3.12
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# https://github.com/macs3-project/MACS/issues/598#issuecomment-1812622572
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python311.pkgs.buildPythonPackage rec {
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pname = "macs2";
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version = "2.2.9.1";
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pyproject = true;
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src = fetchPypi {
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pname = lib.toUpper pname;
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inherit version;
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hash = "sha256-jVa8N/uCP8Y4fXgTjOloQFxUoKjNl3ZoJwX9CYMlLRY=";
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};
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patches = [
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# https://github.com/macs3-project/MACS/pull/590
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(fetchpatch {
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name = "remove-pip-build-dependency.patch";
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url = "https://github.com/macs3-project/MACS/commit/cf95a930daccf9f16e5b9a9224c5a2670cf67939.patch";
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hash = "sha256-WB3Ubqk5fKtZt97QYo/sZDU/yya9MUo1NL4VsKXR+Yo=";
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})
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];
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build-system = with python311.pkgs; [
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cython_0
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numpy
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setuptools
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];
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dependencies = with python311.pkgs; [
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numpy
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];
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__darwinAllowLocalNetworking = true;
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nativeCheckInputs = with python311.pkgs; [
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unittestCheckHook
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];
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unittestFlagsArray = [
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"-s"
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"test"
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];
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pythonImportsCheck = [ "MACS2" ];
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meta = with lib; {
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description = "Model-based Analysis for ChIP-Seq";
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mainProgram = "macs2";
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homepage = "https://github.com/macs3-project/MACS/";
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changelog = "https://github.com/macs3-project/MACS/releases/tag/v${version}";
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license = licenses.bsd3;
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maintainers = with maintainers; [ gschwartz ];
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};
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}
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